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IsletJ

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Name

IsletJ

Software

ImageJ

Author

Jan Švihlík and Jan Schier

Maintainer

Jan Schier

Status

Active


IsletJ is a plugin for analysis of microscopy images of Langerhans islets in ImageJ. It provides free, open source tool for analysis of islets diameter and number and for estimation of sample purity (ratio of endocrine/exocrine tissue area).

Installation

IsletJ was designed to work with plain ImageJ. It requires Java-8.

The simplest way to install the plugin is using Fiji:

  • Download current version of Fiji from here
  • Launch Fiji and run HelpUpdate…
  • Select Manage update sites
  • Check the IsletJ box and then select Close
  • Select Apply changes
  • Restart Fiji

Documentation

User documentation in PDF format is available at github

Publication

  • Habart D., Švihlík J., Schier Jan, Cahová M., Girman P., Zacharovová K., Berková Z., Kříž J., Fabryová E., Kosinová L., Papáčková Z., Kybic J., Saudek F. : Automated Analysis of Microscopic Images of Isolated Pancreatic Islets , Cell Transplantation vol.25, 12 (2016), p. 2145-2156, DOI https://doi.org/10.3727/096368916X692005