CiliaQ refers to a set of three ImageJ plugins to quantify ciliary shape, length, and fluorescence in 2D, 3D, and 4D images of cilia, acquired with a fluorescence / confocal microscope.
The software is published with the following publication:
Using and citing CiliaQ
Visit the CiliaQ GitHub repository at https://github.com/hansenjn/CiliaQ for more information on how to use and cite CiliaQ. In the GitHub repository you find also the CiliaQ wiki with Tutorials and a Q&A section.