CellProfiler is free open-source software designed to enable biologists without training in computer vision or programming to quantitatively measure phenotypes from thousands of images automatically.
Using CellProfiler
All CellProfiler documentation is on the CellProfiler website. We recommend the Getting Started section for new users.
Also of note:
- Video Tutorials
- Version-specific Manuals
- Examples
- Support on the Image.sc forum
Combining ImageJ and CellProfiler
See RunImageJScript.
