I like coding, algorithms, data structures and microtubules.
So I develop and maintain many open-source plugins, in the various areas where scientific curiosity takes me.
Last couple of years I’m into 3D and large data.
The most recent project I’m working on right now is BigVolumeBrowser.
My other plugins:
- curve (filaments, microtubules) tracing in 3D BigTrace and in 2D CurveTrace;
- spots detection/colocalization ComDet;
- localization microscopy data analysis DoM_Utrecht (drift, chromatic aberration correction, 3D, tracking);
- kymographs of arbitrary width, projection and data type KymoResliceWide;
- iterative averaging of arbitrary 2D/3D/4D multi-channel datasets AveragingND;
- spatio-temporal correlations Correlescence (STICS, TICS and etc);
- FLIM data analysis PTU_Reader and PTU_Writer;
- combining or making montage from tiffs of different sizes UnequalTiffs;
- color-coding z-stacks ZstackDepthColorCode;
- generating ContourLines;
- fast virtual reading of hyperstacks from Metamorph.
And then there are multiple macros and some contributions to other projects.
I work at the Cell Biology, Neurobiology and Biophysics department of Utrecht University, NL.
