I am a Postdoctoral Fellow at the Institute of Neuroscience (ION), CAS, where I lead the Chimeric Nano Sensor (CNS) Team. My research focuses on the development of genetically encoded fluorescent biosensors and their application in studying neurochemical dynamics in live animals.
🔬 Biosensor Tools
I develop Biosensor Tools, a suite of open-source ImageJ/Fiji plugins designed for ratiometric imaging, motion correction, metadata inspection, and AI-powered denoising.
📥 Installation
The easiest way to install and stay up-to-date is via the Fiji Update Site:
- Open Fiji and navigate to
Help > Update... - Click
Manage update sites. - Click
Add update siteand enter:- Name:
Biosensor Tools - URL:
https://sites.imagej.net/Biosensor-Tools/
- Name:
- Close the window and click
Apply changes.
🛠️ Plugin List
| Plugin | Description | Links |
|---|---|---|
| RIA-J (Ratio Imaging Analyzer) |
Publication-grade ratiometric analysis. Features background subtraction, pixel-by-pixel ratio calculation, and IMD display mode. |
Wiki GitHub DOI |
| FIA (Fluorescence Image Aligner) |
Motion correction & Registration. Robustly stabilizes live-animal time-lapse datasets (Global & Dense Flow) before quantification. |
Wiki GitHub DOI |
| NIA (Neural Inference Assistant) |
Zero-setup AI denoising. Runs deep learning models (DnCNN) directly in Java via ONNX Runtime. No Python, no CUDA required. Supports 5D hyperstacks. |
Wiki GitHub DOI |
| MIA (Metadata Inspection Analyzer) |
Metadata explorer. Instantly extracts hidden tags (Olympus .oir, OME-XML) and exports summaries to Excel/CSV. |
Wiki GitHub DOI |
| WinMan (Window Manager) |
Workspace accelerator. Efficiently manages, tiles, and filters multiple image windows to keep your workspace clean. |
Wiki GitHub DOI |
