This is an archive of the old MediaWiki-based ImageJ wiki. The current website can be found at imagej.net.
Category:Plugins
This page is an index of available plugins for ImageJ. Many of them come with the Fiji distribution of ImageJ.
Pages in category "Plugins"
The following 200 pages are in this category, out of 275 total.
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- ActogramJ
- Align Image by line ROI
- Align RGB planes
- Anaglyph for Red Cyan glasses
- Analyze Skeleton 2D time series
- Analyze Stripes
- AnalyzeSkeleton
- Anisotropic Diffusion 2D
- AplimTools
- Arrow
- Atlas Toolkit
- Auto Crop
- Auto Local Threshold
- Auto Threshold
- Automatic detection of neuronal labeling in histological image series
- Automatic optimal filament segmentation
B
C
- Cell Counter
- Celsius to fahrenheit
- Chess
- Classic Watershed
- ClearVolume
- Coloc 2
- Colocalization by Cross Correlation
- Colocalization Test
- Colocalization Threshold
- Colocalize
- Color Histogram
- Color Inspector 3D
- Colorizer Overlay
- Colour Deconvolution
- Colour merge
- Copy Pixel Size
- Correct 3D Drift
- Cover Maker
- Crop (3D)
D
- Deep Zoom
- Delaunay Voronoi
- Delayed Snapshot
- Descriptor based registration
- DHM Utilities
- DHM Utilities/Phase Unwrapping
- DHM Utilities/Reconstruction
- DiameterJ
- Dichromacy
- DICOM open
- Differentials
- Diffraction PSF 3D
- Directionality
- Distance Analysis
- Distance Transform Watershed
- Distortion Correction
- Dithering
- DS4H Image Alignment
- Dynamic Reslice
- Dynamic ROI Profiler
E
F
I
- IJ Robot
- Image Expression Parser
- Image Stabilizer
- Image Stitching
- Image5D
- Importing Image Files
- Integral Image Filters
- Interaction Analysis
- Interactive Affine
- Interactive Fitting
- Interactive Marker-controlled Watershed
- Interactive Moving Least Squares
- Interactive Perspective
- Interactive Rigid
- Interactive Similarity
- Interactive Stack Rotation
- Interactive Watershed
- IsoData Classifier
- Iterative Deconvolve 3D
L
M
- M I P
- Make Fiji Package
- MaMuT
- Manual drift correction plugin
- Manual Tracking
- Marker-controlled Watershed
- Max Inscribed Circles
- Maximum Entropy Threshold
- Microscope Measurement Tools
- Miniature Faking
- Minimum Cost Z surface Projection
- MiToBo
- Mixture Modeling Thresholding
- MorphoLibJ
- Morphological Segmentation
- MosaicIA
- MosaicJ
- MOSAICsuite
- Moving Least Squares
- MTrack2
- MTrackJ
- Multi Kymograph
- Multi Otsu Threshold
- Multi Stack Montage
- Multi-Template Matching
- Multiple Image Processor
- Multithreaded Image Processing in Clojure
- Multithreaded Image Processing in JavaScript
- MultiThresholder
- Multiview-Reconstruction
- MyofibrilJ
P
R
- RandomJ
- RATS: Robust Automatic Threshold Selection
- Read and Write Excel
- Reconstruct Reader
- Region Competition
- Register Virtual Stack Slices
- Replace Red with Magenta
- Report a Bug
- Retinex
- RGB Measure Plus
- RGB Profiler
- RGB to Montage
- RGB-Gray Merge
- Roi 1-click tools
- ROI Picker
- Rolling Ball Background Subtraction
