This is an archive of the old MediaWiki-based ImageJ wiki. The current website can be found at imagej.net.
Category:Tutorials
Contents
Tutorials for new users
The following tutorials are highly recommended for new users:
| 1. | Getting started | An introduction to the ImageJ application |
|---|---|---|
| 2. | Principles | Must-read guidelines for effective acquisition and analysis of images |
| 3. | Living Workshops | Workshops for ImageJ/Fiji at introductory, intermediate and advanced levels |
| 4. | Scripting | Become a power user by writing scripts! |
Tutorials for specific image processing techniques
The Techniques guides in the sidebar present common image processing workflows.
Tutorials for specific plugins
Tutorials provided by microscopy facilities
Many valuable resources for science are provided by facilities which collect, retain and maintain knowledge that might otherwise be lost. Here is a list of links to facilities providing tutorials and documentation:
- University of Geneva
- BioDIP (formerly known as Imaging Facilities Network) teaching materials
- Centre for Molecular and Cellular Imaging at the EMBL
Tutorials by microscope vendors
- Karios Instruments has a number of interesting Fiji tutorials (the same page shows tutorials on using CellProfiler, too).
Tutorials for software developers and scripters
See also
- Presentations about ImageJ
- Fiji YouTube channel
- ImageJ videos and Fiji videos on YouTube
- Lecture BioImage Analysis 2020 videos on YouTube by Robert Haase
Pages in category "Tutorials"
The following 105 pages are in this category, out of 105 total.
C
D
F
G
H
- Hippocampal CA3 Interneuron
- How to apply a common operation to a complete directory
- How to call a plugin with a range of parameters
- How to contribute to an existing plugin or library
- How to make a new tutorial
- How to set up and populate an update site
- How to write custom actions for TrackMate
- How to write your own detection algorithm for TrackMate
- How to write your own edge feature analyzer algorithm for TrackMate
- How to write your own particle-linking algorithm for TrackMate
- How to write your own spot feature analyzer algorithm for TrackMate
- How to write your own track feature analyzer algorithm for TrackMate
- How to write your own viewer for TrackMate
I
M
R
S
- Save as animated gif
- Saving and Exporting
- Segmentation
- Shortcuts to folders inside Fiji.app
- Simple Neurite Tracer: "Export to SWC" Tutorial
- Simple Neurite Tracer: Sholl analysis
- Skeleton analysis video tutorial
- Spatial Calibration
- Spirals
- SSH public keys
- Stack-slice Manipulations
- Statistical Region Merging
- Stitch and Align a sequence of grid images Tutorial
- Stochastic Denoise
T
- T-functions
- Test of PNG-screenshot tutorial
- TopoJ
- TrackMate
- TrackScheme
- Trainable Segmentation Plugin (deprecated)
- Trainable Segmentation Plugin Implementation
- Trainable Weka Segmentation - How to compare classifiers
- Trainable Weka Segmentation - How to install new classifiers
- TrakEM2 add more sections/layers tutorial
- TrakEM2 align sections tutorial
- TrakEM2 basics tutorial
- TrakEM2 measurements tutorial
- TrakEM2 saving project tutorial
- TrakEM2 segmentation modes tutorial
- TrakEM2 semi-automatic segmentation tutorial
- TrakEM2 tutorials
