[ImageJ-devel] [fiji-devel] Re: Fiji and scifio

[Curtis Rueden]

Hi Stephan,

I would like to add imglib2-algorithms and imglib2-algorithms-gpl to Fiji
> now


Definitely!

If there are no further concerns, I will merge this with master tonight
> and upload the compiled jars to the updater.
>

Sounds good, thanks for doing it!

Regards,
Curtis


On Tue, Apr 3, 2012 at 9:19 AM, Stephan Saalfeld <saalfeld at mpi-cbg.de>wrote:

> Hi Curtis,
>
> thanks for fixing.  It compiles for me.  I would like to add
> imglib2-algorithms and imglib2-algorithms-gpl to Fiji now and have
> committed the respective changes into the topic branch
>
> imglib2-algorithms
>
> If there are no further concerns, I will merge this with master tonight
> and upload the compiled jars to the updater.
>
> Best regards,
> Stephan
>
>
>
>
> On Mon, 2012-04-02 at 16:06 -0500, Curtis Rueden wrote:
> > Hi again,
> >
> >         I am working on a fix now and will commit by the end of today.
> >
> > Problem should be fixed now. Please write back with any issues, and
> > I'll take a look tomorrow if needed.
> >
> > -Curtis
> >
> >
> > On Mon, Apr 2, 2012 at 1:26 PM, Curtis Rueden <ctrueden at wisc.edu>
> > wrote:
> >         Hi Stephan,
> >
> >
> >                 are there plans to include scifio into some Fiji
> >                 branch?  Or is it already?
> >
> >
> >         SCIFIO is part of the Bio-Formats submodule, and is already
> >         included as part of loci_tools.jar.
> >
> >
> >                 I would like to build imglib2 master by Fiji's
> >                 Build.sh which
> >                 is currently impossible due to the dependency of
> >                 imglib-io to scifio.
> >
> >
> >         Thanks for letting me know! The problem is not the dependency
> >         on SCIFIO, but rather a version clash between codebases. I am
> >         working on a fix now and will commit by the end of today.
> >
> >         Regards,
> >         Curtis
> >
> >
> >
> >
> >         On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld
> >         <saalfeld at mpi-cbg.de> wrote:
> >                 Hi,
> >
> >                 are there plans to include scifio into some Fiji
> >                 branch?  Or is it
> >                 already?  I would like to build imglib2 master by
> >                 Fiji's Build.sh which
> >                 is currently impossible due to the dependency of
> >                 imglib-io to scifio.
> >
> >                 Building imglib2-io.jar <-
> >                 imglib2/io/src/main/java/net/imglib2/io...
> >
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147:
> cannot find symbol
> >                 symbol  : method
> >                 guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> >                 location: class loci.formats.AxisGuesser
> >                 AxisGuesser.guessImgLib(axes, oldLengths,
> >                 axisLengths);
> >                           ^
> >
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453:
> cannot find symbol
> >                 symbol  : method
> >                 guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> >                 location: class loci.formats.AxisGuesser
> >                 dimOrder = AxisGuesser.guessImgLib(axes, oldLengths,
> >                 axisLengths);
> >
> >
> >                 Thanks and best,
> >                 Stephan
> >
> >
> >
> >
> >
> >
> >
> >                 _______________________________________________
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> >                 ImageJ-devel at imagej.net
> >                 http://imagej.net/mailman/listinfo/imagej-devel
> >
> >
> >
>
> --
> Please avoid top-posting, and please make sure to reply-to-all!
>
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