Hi Stephan,<br><br><blockquote style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex" class="gmail_quote">I would like to add imglib2-algorithms and imglib2-algorithms-gpl to Fiji now</blockquote>
<br>Definitely!<br><br><blockquote style="margin:0pt 0pt 0pt 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex" class="gmail_quote">If there are no further concerns, I will merge this with master tonight<br>
and upload the compiled jars to the updater.<br></blockquote><br>Sounds good, thanks for doing it!<br><br>Regards,<br>Curtis<br><br><br><div class="gmail_quote">On Tue, Apr 3, 2012 at 9:19 AM, Stephan Saalfeld <span dir="ltr"><<a href="mailto:saalfeld@mpi-cbg.de">saalfeld@mpi-cbg.de</a>></span> wrote:<br>
<blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">Hi Curtis,<br>
<br>
thanks for fixing. It compiles for me. I would like to add<br>
imglib2-algorithms and imglib2-algorithms-gpl to Fiji now and have<br>
committed the respective changes into the topic branch<br>
<br>
imglib2-algorithms<br>
<br>
If there are no further concerns, I will merge this with master tonight<br>
and upload the compiled jars to the updater.<br>
<br>
Best regards,<br>
Stephan<br>
<div class="HOEnZb"><div class="h5"><br>
<br>
<br>
<br>
On Mon, 2012-04-02 at 16:06 -0500, Curtis Rueden wrote:<br>
> Hi again,<br>
><br>
> I am working on a fix now and will commit by the end of today.<br>
><br>
> Problem should be fixed now. Please write back with any issues, and<br>
> I'll take a look tomorrow if needed.<br>
><br>
> -Curtis<br>
><br>
><br>
> On Mon, Apr 2, 2012 at 1:26 PM, Curtis Rueden <<a href="mailto:ctrueden@wisc.edu">ctrueden@wisc.edu</a>><br>
> wrote:<br>
> Hi Stephan,<br>
><br>
><br>
> are there plans to include scifio into some Fiji<br>
> branch? Or is it already?<br>
><br>
><br>
> SCIFIO is part of the Bio-Formats submodule, and is already<br>
> included as part of loci_tools.jar.<br>
><br>
><br>
> I would like to build imglib2 master by Fiji's<br>
> Build.sh which<br>
> is currently impossible due to the dependency of<br>
> imglib-io to scifio.<br>
><br>
><br>
> Thanks for letting me know! The problem is not the dependency<br>
> on SCIFIO, but rather a version clash between codebases. I am<br>
> working on a fix now and will commit by the end of today.<br>
><br>
> Regards,<br>
> Curtis<br>
><br>
><br>
><br>
><br>
> On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld<br>
> <<a href="mailto:saalfeld@mpi-cbg.de">saalfeld@mpi-cbg.de</a>> wrote:<br>
> Hi,<br>
><br>
> are there plans to include scifio into some Fiji<br>
> branch? Or is it<br>
> already? I would like to build imglib2 master by<br>
> Fiji's Build.sh which<br>
> is currently impossible due to the dependency of<br>
> imglib-io to scifio.<br>
><br>
> Building imglib2-io.jar <-<br>
> imglib2/io/src/main/java/net/imglib2/io...<br>
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147: cannot find symbol<br>
> symbol : method<br>
> guessImgLib(net.imglib2.meta.AxisType[],long[],long[])<br>
> location: class loci.formats.AxisGuesser<br>
> AxisGuesser.guessImgLib(axes, oldLengths,<br>
> axisLengths);<br>
> ^<br>
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453: cannot find symbol<br>
> symbol : method<br>
> guessImgLib(net.imglib2.meta.AxisType[],long[],long[])<br>
> location: class loci.formats.AxisGuesser<br>
> dimOrder = AxisGuesser.guessImgLib(axes, oldLengths,<br>
> axisLengths);<br>
><br>
><br>
> Thanks and best,<br>
> Stephan<br>
><br>
><br>
><br>
><br>
><br>
><br>
><br>
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