[ImageJ-devel] Fiji and scifio

[Stephan Saalfeld]

Hi Curtis,

thanks for fixing.  It compiles for me.  I would like to add
imglib2-algorithms and imglib2-algorithms-gpl to Fiji now and have
committed the respective changes into the topic branch

imglib2-algorithms

If there are no further concerns, I will merge this with master tonight
and upload the compiled jars to the updater.

Best regards,
Stephan




On Mon, 2012-04-02 at 16:06 -0500, Curtis Rueden wrote:
> Hi again,
> 
>         I am working on a fix now and will commit by the end of today.
> 
> Problem should be fixed now. Please write back with any issues, and
> I'll take a look tomorrow if needed.
> 
> -Curtis
> 
> 
> On Mon, Apr 2, 2012 at 1:26 PM, Curtis Rueden <ctrueden at wisc.edu>
> wrote:
>         Hi Stephan, 
>         
>         
>                 are there plans to include scifio into some Fiji
>                 branch?  Or is it already?
>         
>         
>         SCIFIO is part of the Bio-Formats submodule, and is already
>         included as part of loci_tools.jar. 
>         
>         
>                 I would like to build imglib2 master by Fiji's
>                 Build.sh which
>                 is currently impossible due to the dependency of
>                 imglib-io to scifio.
>         
>         
>         Thanks for letting me know! The problem is not the dependency
>         on SCIFIO, but rather a version clash between codebases. I am
>         working on a fix now and will commit by the end of today.
>         
>         Regards,
>         Curtis 
>         
>         
>         
>         
>         On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld
>         <saalfeld at mpi-cbg.de> wrote:
>                 Hi,
>                 
>                 are there plans to include scifio into some Fiji
>                 branch?  Or is it
>                 already?  I would like to build imglib2 master by
>                 Fiji's Build.sh which
>                 is currently impossible due to the dependency of
>                 imglib-io to scifio.
>                 
>                 Building imglib2-io.jar <-
>                 imglib2/io/src/main/java/net/imglib2/io...
>                 ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147: cannot find symbol
>                 symbol  : method
>                 guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
>                 location: class loci.formats.AxisGuesser
>                 AxisGuesser.guessImgLib(axes, oldLengths,
>                 axisLengths);
>                           ^
>                 ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453: cannot find symbol
>                 symbol  : method
>                 guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
>                 location: class loci.formats.AxisGuesser
>                 dimOrder = AxisGuesser.guessImgLib(axes, oldLengths,
>                 axisLengths);
>                 
>                 
>                 Thanks and best,
>                 Stephan
>                 
>                 
>                 
>                 
>                 
>                 
>                 
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>         
>