[ImageJ-devel] Fiji and scifio

[Stephan Preibisch]

Definitely, could you please also update imglib2 itself as well as imglib2-ij and maybe imglib2-io? We fixed some bugs in there and it would be nice to have them up-to-date,too ...

Bye bye,
Steffi



Am Apr 3, 2012 um 10:19 schrieb Stephan Saalfeld <saalfeld at mpi-cbg.de>:

> Hi Curtis,
> 
> thanks for fixing.  It compiles for me.  I would like to add
> imglib2-algorithms and imglib2-algorithms-gpl to Fiji now and have
> committed the respective changes into the topic branch
> 
> imglib2-algorithms
> 
> If there are no further concerns, I will merge this with master tonight
> and upload the compiled jars to the updater.
> 
> Best regards,
> Stephan
> 
> 
> 
> 
> On Mon, 2012-04-02 at 16:06 -0500, Curtis Rueden wrote:
>> Hi again,
>> 
>>        I am working on a fix now and will commit by the end of today.
>> 
>> Problem should be fixed now. Please write back with any issues, and
>> I'll take a look tomorrow if needed.
>> 
>> -Curtis
>> 
>> 
>> On Mon, Apr 2, 2012 at 1:26 PM, Curtis Rueden <ctrueden at wisc.edu>
>> wrote:
>>        Hi Stephan, 
>> 
>> 
>>                are there plans to include scifio into some Fiji
>>                branch?  Or is it already?
>> 
>> 
>>        SCIFIO is part of the Bio-Formats submodule, and is already
>>        included as part of loci_tools.jar. 
>> 
>> 
>>                I would like to build imglib2 master by Fiji's
>>                Build.sh which
>>                is currently impossible due to the dependency of
>>                imglib-io to scifio.
>> 
>> 
>>        Thanks for letting me know! The problem is not the dependency
>>        on SCIFIO, but rather a version clash between codebases. I am
>>        working on a fix now and will commit by the end of today.
>> 
>>        Regards,
>>        Curtis 
>> 
>> 
>> 
>> 
>>        On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld
>>        <saalfeld at mpi-cbg.de> wrote:
>>                Hi,
>> 
>>                are there plans to include scifio into some Fiji
>>                branch?  Or is it
>>                already?  I would like to build imglib2 master by
>>                Fiji's Build.sh which
>>                is currently impossible due to the dependency of
>>                imglib-io to scifio.
>> 
>>                Building imglib2-io.jar <-
>>                imglib2/io/src/main/java/net/imglib2/io...
>>                ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147: cannot find symbol
>>                symbol  : method
>>                guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
>>                location: class loci.formats.AxisGuesser
>>                AxisGuesser.guessImgLib(axes, oldLengths,
>>                axisLengths);
>>                          ^
>>                ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453: cannot find symbol
>>                symbol  : method
>>                guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
>>                location: class loci.formats.AxisGuesser
>>                dimOrder = AxisGuesser.guessImgLib(axes, oldLengths,
>>                axisLengths);
>> 
>> 
>>                Thanks and best,
>>                Stephan
>> 
>> 
>> 
>> 
>> 
>> 
>> 
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>>                ImageJ-devel at imagej.net
>>                http://imagej.net/mailman/listinfo/imagej-devel 
>> 
>> 
>> 
> 
> 
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