[ImageJ-devel] Fiji and scifio

[Stephan Saalfeld]

Sure,

all that noise is solely about these workarounds.

Best,
Stephan

On Tue, 2012-04-03 at 11:03 -0400, Stephan Preibisch wrote:
> Definitely, could you please also update imglib2 itself as well as imglib2-ij and maybe imglib2-io? We fixed some bugs in there and it would be nice to have them up-to-date,too ...
> 
> Bye bye,
> Steffi
> 
> 
> 
> Am Apr 3, 2012 um 10:19 schrieb Stephan Saalfeld <saalfeld at mpi-cbg.de>:
> 
> > Hi Curtis,
> > 
> > thanks for fixing.  It compiles for me.  I would like to add
> > imglib2-algorithms and imglib2-algorithms-gpl to Fiji now and have
> > committed the respective changes into the topic branch
> > 
> > imglib2-algorithms
> > 
> > If there are no further concerns, I will merge this with master tonight
> > and upload the compiled jars to the updater.
> > 
> > Best regards,
> > Stephan
> > 
> > 
> > 
> > 
> > On Mon, 2012-04-02 at 16:06 -0500, Curtis Rueden wrote:
> >> Hi again,
> >> 
> >>        I am working on a fix now and will commit by the end of today.
> >> 
> >> Problem should be fixed now. Please write back with any issues, and
> >> I'll take a look tomorrow if needed.
> >> 
> >> -Curtis
> >> 
> >> 
> >> On Mon, Apr 2, 2012 at 1:26 PM, Curtis Rueden <ctrueden at wisc.edu>
> >> wrote:
> >>        Hi Stephan, 
> >> 
> >> 
> >>                are there plans to include scifio into some Fiji
> >>                branch?  Or is it already?
> >> 
> >> 
> >>        SCIFIO is part of the Bio-Formats submodule, and is already
> >>        included as part of loci_tools.jar. 
> >> 
> >> 
> >>                I would like to build imglib2 master by Fiji's
> >>                Build.sh which
> >>                is currently impossible due to the dependency of
> >>                imglib-io to scifio.
> >> 
> >> 
> >>        Thanks for letting me know! The problem is not the dependency
> >>        on SCIFIO, but rather a version clash between codebases. I am
> >>        working on a fix now and will commit by the end of today.
> >> 
> >>        Regards,
> >>        Curtis 
> >> 
> >> 
> >> 
> >> 
> >>        On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld
> >>        <saalfeld at mpi-cbg.de> wrote:
> >>                Hi,
> >> 
> >>                are there plans to include scifio into some Fiji
> >>                branch?  Or is it
> >>                already?  I would like to build imglib2 master by
> >>                Fiji's Build.sh which
> >>                is currently impossible due to the dependency of
> >>                imglib-io to scifio.
> >> 
> >>                Building imglib2-io.jar <-
> >>                imglib2/io/src/main/java/net/imglib2/io...
> >>                ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147: cannot find symbol
> >>                symbol  : method
> >>                guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> >>                location: class loci.formats.AxisGuesser
> >>                AxisGuesser.guessImgLib(axes, oldLengths,
> >>                axisLengths);
> >>                          ^
> >>                ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453: cannot find symbol
> >>                symbol  : method
> >>                guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> >>                location: class loci.formats.AxisGuesser
> >>                dimOrder = AxisGuesser.guessImgLib(axes, oldLengths,
> >>                axisLengths);
> >> 
> >> 
> >>                Thanks and best,
> >>                Stephan
> >> 
> >> 
> >> 
> >> 
> >> 
> >> 
> >> 
> >>                _______________________________________________
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> >>                ImageJ-devel at imagej.net
> >>                http://imagej.net/mailman/listinfo/imagej-devel 
> >> 
> >> 
> >> 
> > 
> > 
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