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Ticket #556 (closed defect: worksforme)

Opened 2011-06-01T15:48:54-05:00

Last modified 2011-06-02T17:14:21-05:00

Imported image reverses role of C & Z axis

Reported by:	bdezonia	Owned by:	curtis
Priority:	major	Milestone:	~~biweekly-2011: May-23 to Jun-03~~
Component:	I/O	Version:
Severity:	serious	Keywords:
Cc:		Blocked By:
Blocking:

Description

Use File :: Import :: BioFormats. Select the multi-channel-4d-series.ome.tiff file from the ome tiff sample data store. Note that imported image has C & Z reversed. The image plane data has labels that do not line up with actual slider values.

Change History

comment:1 Changed 2011-06-01T17:46:39-05:00 by curtis

I do not see this problem with the latest code. All dimensions and sliders work as expected. Could you check again after updating the ImageJ2 and ImgLib codebases?

comment:2 Changed 2011-06-02T15:41:57-05:00 by bdezonia

As of revision 1fd50c08574f4a755aeae24a62c077be6cc1a695 I cannot duplicate directly. However if you open that series and run the Scale plugin and scale in x & y only the resulting C & Z is reversed.

comment:3 Changed 2011-06-02T17:14:21-05:00 by bdezonia

Status changed from new to closed
Resolution set to worksforme

Original issue cannot be duplicated with latest code. Assume fixed.

Opening ticket #562 to handle C&Z axis swap of Dataset.