[ImageJ-devel] ImgLib2 and RGB Stack Images / Extending TrackMate

tinevez at pasteur.fr tinevez at pasteur.fr
Mon Mar 9 14:55:47 CDT 2015

Hi Thorsten, 

I think the way is to wrap your image into a ARGBType ImgLib2 images. 

But you would have to change TrackMate because right now the GUI refuses to start with a RGB image. 



Jean-Yves Tinevez
PFID - Imagopole
Institut Pasteur
25-28, rue du Docteur Roux
75724 Paris cedex 15 
mob: +33 7 88 17 97 69
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fax: +33 1 44 38 92 54

De : Thorsten Wagner
Envoyé : ‎lundi‎ ‎9‎ ‎mars‎ ‎2015 ‎20‎:‎47
À : imagej-devel at imagej.net

Dear list,

I currently want to extend TrackMate with a spot feature for RGB Stacks.
I want to calculate the hue of the center for each spot to filter the
particle by color before connecting the dots to tracks.

However, TrackMate uses ImgLib2 and I wondering how to work with RGB
Stack images. I cant find any examples how to do that.

Any help is highly appreciated!


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