[ImageJ-devel] plugin dev in elcipse

[Mark Hiner]

Hi Daniel,

>The Fiji.sc docs describe how to do a plugin in the script editor,
>or how to develop imageJ itself in eclipse,
>but not how to get one of the external Fiji plugins, like coloc analysis,
>and then run Fiji with my hacked plugin code running from eclipse????

This process is described in the Developing Fiji in Eclipse tutorial[1] -
which I just updated with a bit more information.

>i can run imageJ from there by highlighting the ij jar and doing run as
java application

If you are running ij.jar from the Maven dependencies of
Colocalisation_Analysis, then Eclipse is likely just literally executing
the jar without anything else on the classpath. Using Debug.run will give
you an ImageJ with your plugin loaded properly.

Also, if you don't want to make a temporary main method, you can always
build the .jar for your plugin and put it into an existing Fiji
installation.

Hope that helps.

Best,
Mark

[1] http://imagej.net/Developing_Fiji_in_Eclipse#Running_and_Debugging


On Thu, Jun 25, 2015 at 7:32 AM, Daniel White <dan at chalkie.org.uk> wrote:

> Hi All,
>
> I'm setting up my plugin dev environment (win7 x64), by reading the docs
> on the fiji.sc pages.
> I got eclipse installed, new JDK installed and seen by eclipse,
> Colocalization_Analysis plugin cloned from github using github for windows
> I imported the plugin as described with the import maven project gadget in
> eclipse,
> and it got the dependencies as jars apparently.
>
> So i can run imageJ from there by highlighting the ij jar and doing run as
> java application,
> but the coloc_2 plugin doesnt appear in the Analyze menu??????
>
> The Fiji.sc docs describe how to do a plugin in the script editor,
> or how to develop imageJ itself in eclipse,
> but not how to get one of the external Fiji plugins, like coloc analysis,
> and then run Fiji with my hacked plugin code running from eclipse????
>
> Can I help fix the docs so noobs like me can get started easier,
> and in the process get myself up and running with a little help from on of
> you folks please?
>
> cheers
>
> Dan White
>
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>
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