[ImageJ-devel] Where do I find the Fiji parent pom?

Stephan Preibisch stephan.preibisch at gmx.de
Mon Nov 17 13:53:39 CST 2014


Thanks a lot guys for the explanations. This was very helpful :)

Cheers,
Steffi

> On Nov 17, 2014, at 13:48 , Curtis Rueden <ctrueden at wisc.edu> wrote:
> 
> Hi Steffi,
> 
> FWIW, I bumped to BF 5.0.6 just now:
> https://github.com/scijava/pom-scijava/commit/931b7add9607d35022432af0f9999cc38661241c <https://github.com/scijava/pom-scijava/commit/931b7add9607d35022432af0f9999cc38661241c>
> 
> Regards,
> Curtis
> 
> On Mon, Nov 17, 2014 at 12:41 PM, Mark Hiner <hiner at wisc.edu <mailto:hiner at wisc.edu>> wrote:
> Hi Stephan,
> 
> >Where is the 5.0.3 defined to which it currently points?
> 
> Here it is <https://github.com/scijava/pom-scijava/blob/master/pom.xml#L191>! :) It's in pom-scijava to allow any SciJava project to use a consistent version of Bio-Formats.
> 
> Let me know if you have any more questions!
> 
> - Mark
> 
> On Mon, Nov 17, 2014 at 12:27 PM, Stephan Preibisch <stephan.preibisch at gmx.de <mailto:stephan.preibisch at gmx.de>> wrote:
> Thanks a lot Mark,
> 
> I managed to change the version to 5.0.6.!
> 
> Just out of curiosity, I still do not see the bio-formats version being defined in here: https://github.com/fiji/pom-fiji/blob/master/pom.xml <https://github.com/fiji/pom-fiji/blob/master/pom.xml>
> 
> Where is the 5.0.3 defined to which it currently points?
> 
> Thanks so much,
> Stephan
> 
>> On Nov 17, 2014, at 13:17 , Mark Hiner <hiner at wisc.edu <mailto:hiner at wisc.edu>> wrote:
>> 
>> >The background is that I want to try Bioformats 5.0.6, so I guess the right thing is to overwrite the version tag inherited from fiji-pom. I just wanted to see how it is defined in there to actually overwrite it.
>> 
>> It would be helpful if I finished reading your complete question.
>> 
>> The Bio-Formats dependencies are managed in pom-scijava <https://github.com/scijava/pom-scijava>. You'll want to look at the <properties> and <dependencyManagement> blocks to get a feel how things work. For testing 5.0.6 locally it's also fine to put a <bio-formats.version> property in the pom.xml of the project you're testing.
>> 
>> Best,
>> Mark
>> 
>> On Mon, Nov 17, 2014 at 12:12 PM, Mark Hiner <hiner at wisc.edu <mailto:hiner at wisc.edu>> wrote:
>> Hi Stephan,
>> 
>> >I think this is maybe a stupid question, but where do I find the parent pom-fiji?
>> 
>> It's always helpful to ask questions on public lists! All of the project poms (fijji, imagej, scijava, scifio) are in their own repo under their respective organization. So pom-fiji is: 
>> https://github.com/fiji/pom-fiji <https://github.com/fiji/pom-fiji>
>> 
>> Also, if you go to an individual organization's page (e.g. https://github.com/fiji/ <https://github.com/fiji/>) you can filter the available repositories to look for any component.
>> 
>> Hope that helps!
>> 
>> - Mark
>> 
>> On Mon, Nov 17, 2014 at 12:06 PM, Stephan Preibisch <stephan.preibisch at gmx.de <mailto:stephan.preibisch at gmx.de>> wrote:
>> Hi,
>> 
>> I think this is maybe a stupid question, but where do I find the parent pom-fiji? The pom.xml in the fiji project itself still defines it as its parent (https://github.com/fiji/fiji/blob/master/pom.xml <https://github.com/fiji/fiji/blob/master/pom.xml>), so I am not sure where to look for it:
>> 
>> <parent>
>> <groupId>sc.fiji</groupId>
>> <artifactId>pom-fiji</artifactId>
>> <version>5.1</version>
>> <relativePath />
>> </parent>
>> 
>> Eclipse also says it cannot locate the parent pom when clicking on the icon for that.
>> 
>> The background is that I want to try Bioformats 5.0.6, so I guess the right thing is to overwrite the version tag inherited from fiji-pom. I just wanted to see how it is defined in there to actually overwrite it.
>> 
>> Thanks so much,
>> Steffi
>> 
>> 
>> ---
>> 
>> Dr. Stephan Preibisch
>> HFSP Fellow
>> Robert H. Singer / Eugene Myers lab
>> 
>> Albert Einstein College of Medicine / HHMI Janelia Farm / MPI-CBG
>> 
>> email: stephan.preibisch at einstein.yu.edu <mailto:stephan.preibisch at einstein.yu.edu> / preibischs at janelia.hhmi.org <mailto:preibischs at janelia.hhmi.org> / preibisch at mpi-cbg.de <mailto:preibisch at mpi-cbg.de>
>> web: http://www.preibisch.net/ <http://fly.mpi-cbg.de/preibisch>
>> 
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>> 
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