[ImageJ-devel] [fiji-devel] Re: jython scripting, No compatible service: io.scif.SCIFIOService

[Mark Hiner]

Hi Harri,

 thank you, the latest Fiji works! The composite image is completely black,
> but that could be just a scaling issue. Or did it look better for you?


Yeah it looked the same for me.. but the number of planes looks accurate.
:) I suspect it is just a scaling issue.

So now I should get to the real work and learn the ImgLib2 API and convert
> my existing script :)
>

Good luck! Let us know if you have any more troubles!

Thanks again for the feedback,
- Mark


On Fri, Feb 28, 2014 at 4:24 AM, Harri Jäälinoja <
harri.jaalinoja at helsinki.fi> wrote:

> On 27/02/14 20:01, Mark Hiner wrote:
>
>> These datasets definitely look worse from the script than Fiji/IJ2, which
>> is reasonable since they aren't composited or autoscaled or anything... but
>> they do look correct to me and opened without error.
>>
>> Anyway, I hope the latest Fiji works for you. Give it a try and let me
>> know if you run into any more problems.
>>
>> Thank you for your persistence!
>>
>
> Hi Mark,
>
> thank you, the latest Fiji works! The composite image is completely black,
> but that could be just a scaling issue. Or did it look better for you?
>
>  I'll keep using Fiji for running the scripts from now on, I don't see any
> benefit in managing the dependencies myself now that you got it working.
>
> So now I should get to the real work and learn the ImgLib2 API and convert
> my existing script :)
>
> Best,
>
> Harri
>
> --
> __________________________________________________
> Harri Jäälinoja
> Light Microscopy Unit
> Institute of Biotechnology, University of Helsinki
> http://www.biocenter.helsinki.fi/bi/lmu/
> +358 9 191 59370 fax +358 9 191 59366
>
>
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