[ImageJ-devel] [fiji-devel] Re: jython scripting, No compatible service: io.scif.SCIFIOService

[Harri Jäälinoja]

On 27/02/14 20:01, Mark Hiner wrote:
> These datasets definitely look worse from the script than Fiji/IJ2, 
> which is reasonable since they aren't composited or autoscaled or 
> anything... but they do look correct to me and opened without error.
>
> Anyway, I hope the latest Fiji works for you. Give it a try and let me 
> know if you run into any more problems.
>
> Thank you for your persistence!

Hi Mark,

thank you, the latest Fiji works! The composite image is completely 
black, but that could be just a scaling issue. Or did it look better for 
you?

  I'll keep using Fiji for running the scripts from now on, I don't see 
any benefit in managing the dependencies myself now that you got it 
working.

So now I should get to the real work and learn the ImgLib2 API and 
convert my existing script :)

Best,
Harri

-- 
__________________________________________________
Harri Jäälinoja
Light Microscopy Unit
Institute of Biotechnology, University of Helsinki
http://www.biocenter.helsinki.fi/bi/lmu/
+358 9 191 59370 fax +358 9 191 59366