[ImageJ-devel] [fiji-devel] Re: jython scripting, No compatible service: io.scif.SCIFIOService

[Mark Hiner]

P.S. Harri I wanted to apologize if your original script did properly
format the classpath.. I tested it on OSX and becase of sed differences it
didn't appear to work to me. When I booted up a linux vm and ran it there
though, the output did look correct, so I am not sure why it wasn't working
for you - as the exception you saw definitely looked like a classpath
error. If the -J-cp + subshell command I posted in my original reply
doesn't work though, please let me know.


On Tue, Feb 25, 2014 at 1:07 PM, Mark Hiner <hinerm at gmail.com> wrote:

> Hi Johannes,
>
> On Tue, Feb 25, 2014 at 12:57 PM, Johannes Schindelin <
> Johannes.Schindelin at gmx.de> wrote:
>
>> Please note that calling the ImageJ launcher with a .py script will
>> magically do the right thing:
>>
>>         ~/Software/fiji-*/Fiji.app/ImageJ-linux64 my-script.py
>>
>
> Thanks! Do note though that this is similarly not working right now for
> Harri's use case, as it is not properly interpreting
> SCIFIOConfig.ImgMode.CELL. The only way I could get it to work was running
> jython directly.
>
> - Mark
>
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