[ImageJ-devel] ImageJ2 Headless Question

[Barry DeZonia]

Hi Joe,

It would be helpful to me if I had more information. How are you organizing
the files for the dataset example? What subdirectories are present in the
IJ2Test directory? In what directory did you place the jar?


On Sun, Sep 22, 2013 at 12:30 AM, Joe Falconer <
joseph.falconer at lincolnuni.ac.nz> wrote:

> Hi,
>
> Hope I'm posting to the correct location.
>
> I'm trying to do something that appears quite simple using ImageJ2 - read
> in a pgm file in headless mode and iterate over and analyse the pixel data
> in the image.
>
> I've looked at the tutorials for ImageJ2 and I've tried the dataset
> example but I'm having some issues. I'm having Maven connector issues in
> Eclipse Kepler so I'm using the complete snapshot all jar and maybe this is
> the cause? This is my trace when running the dataset example :
>
> WARN: Ignoring non-Maven build directory: C:\Documents and
> Settings\Joe\ImagingWorkspace\IJ2Test\bin
> Exception in thread "main" java.lang.IllegalArgumentException: Invalid
> service: imagej.console.DefaultConsoleService
>
> I've also tried the ImgLib2 examples on the fiji site referred to from the
> tutorials page but I've had trouble getting them to run without raising "No
> compatible service: io.scif.SCIFIOService" exception.
>
> I'm guessing I have some build/dependency issues - any suggestions?
>
> thanks for any help
>
> Joe
>
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