[ImageJ-devel] [fiji-devel] LOCI crashes with current Fiji build on runtime

[Curtis Rueden]

Hi Jonas,

> I am unable to import files with LOCI, no matter which loci-jar is
> deleted or not...

I updated Fiji with the 4.4.5 release of Bio-Formats last night, so these
errors are almost certainly my fault.

Unfortunately, I am unable to replicate the problem. I tried updating an
existing Fiji on another workstation, and all worked fine (though I did
have to click "break the dependency" in response to one prompt). I also
tried with a fresh continuous release downloaded from fiji.sc just now, and
it also worked.

If you run Help > Update Fiji, click on Advanced mode, what do you see for
"Locally modified files" and "Uninstalled files only"? A fully up-to-date
Fiji should not have any entries.

-Curtis


On Tue, Dec 11, 2012 at 6:31 AM, <jonas.ogaard at gmail.com> wrote:

> Hi!
>
> I am still having difficulties with the latest Fiji (both w/w/out jre) and
> LOCI. Receiving same errors as described above.
>
> As of now I am unable to import files with LOCI, no matter which loci-jar
> is deleted or not...
>
> Have I magically jinxed my Fiji folder (again) or is this a problem shared
> by others?
>
> Awesome work btw, Johannes (:
>
> //Jonas
>
> On Wednesday, August 1, 2012 7:37:26 PM UTC+2, Johannes Schindelin wrote:
>
>> Hi Sebi,
>>
>> On Wed, 1 Aug 2012, sebr... at gmail.com wrote:
>>
>> > I tried to download the most up-to-date version (
>> > http://jenkins.imagej.net/job/**Stable-Fiji/**
>> lastSuccessfulBuild/artifact/**fiji-nojre.zip<http://jenkins.imagej.net/job/Stable-Fiji/lastSuccessfulBuild/artifact/fiji-nojre.zip>)
>>
>> >
>> >
>> > This contains the loci_tools.jar as well as the the individual jars. So
>> > should i just delete which files? This issues is quite critical for us,
>> > since the Loci Bio-Format import is cruicial for us (and customer) to
>> > import the OME-TIFF data produced by our imaging software.
>>
>> Yes, it is safe to delete loci_tools.jar. My work last year on enabling
>> multiple update sites introduced the bug that removing files from update
>> sites does not mark them as obsolete if you updated the files
>> successfully
>> before. We just did not hit that bug because we did not remove files in a
>> long time ;-)
>>
>> > Do you still have an idea when this problem might get solved?
>>
>> It is fixed in the source code, I just have to upload a new version (for
>> which I need to be comfortable with the current state first, though ;-).
>> Should be happening within the hour.
>>
>> Ciao,
>> Dscho
>>
>
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