[ImageJ-devel] [fiji-devel] LOCI crashes with current Fiji build on runtime

[Jonas Øgaard]

Hi there,

I have a working version of Fiji running at home (where I'm at now) and
don't dare to break it, but I sat at work all day today pulling my hair - I
could not make it work.

I tried fresh downloads (fiji with and without jre), I tried removing one
LOCI-jar, then the other, then both. I tried updating both fiji and imagej
in two seperate clean setups, and also tried repeating updates to make sure
no more components where awaiting updates.

It could be that the java-install is not entirely stable/up-to-date - it's
running JRE6. Haven't tried 7.

I have no clue. Working from home tomorrow where it's safe & stable!

Sincerely,
Jonas


On Tue, Dec 11, 2012 at 5:47 PM, Curtis Rueden <ctrueden at wisc.edu> wrote:

> Hi Jonas,
>
> > I am unable to import files with LOCI, no matter which loci-jar is
> > deleted or not...
>
> I updated Fiji with the 4.4.5 release of Bio-Formats last night, so these
> errors are almost certainly my fault.
>
> Unfortunately, I am unable to replicate the problem. I tried updating an
> existing Fiji on another workstation, and all worked fine (though I did
> have to click "break the dependency" in response to one prompt). I also
> tried with a fresh continuous release downloaded from fiji.sc just now,
> and it also worked.
>
> If you run Help > Update Fiji, click on Advanced mode, what do you see for
> "Locally modified files" and "Uninstalled files only"? A fully up-to-date
> Fiji should not have any entries.
>
> -Curtis
>
>
> On Tue, Dec 11, 2012 at 6:31 AM, <jonas.ogaard at gmail.com> wrote:
>
>> Hi!
>>
>> I am still having difficulties with the latest Fiji (both w/w/out jre)
>> and LOCI. Receiving same errors as described above.
>>
>> As of now I am unable to import files with LOCI, no matter which loci-jar
>> is deleted or not...
>>
>> Have I magically jinxed my Fiji folder (again) or is this a problem
>> shared by others?
>>
>> Awesome work btw, Johannes (:
>>
>> //Jonas
>>
>> On Wednesday, August 1, 2012 7:37:26 PM UTC+2, Johannes Schindelin wrote:
>>
>>> Hi Sebi,
>>>
>>> On Wed, 1 Aug 2012, sebr... at gmail.com wrote:
>>>
>>> > I tried to download the most up-to-date version (
>>> > http://jenkins.imagej.net/job/**Stable-Fiji/**
>>> lastSuccessfulBuild/artifact/**fiji-nojre.zip<http://jenkins.imagej.net/job/Stable-Fiji/lastSuccessfulBuild/artifact/fiji-nojre.zip>)
>>>
>>> >
>>> >
>>> > This contains the loci_tools.jar as well as the the individual jars.
>>> So
>>> > should i just delete which files? This issues is quite critical for
>>> us,
>>> > since the Loci Bio-Format import is cruicial for us (and customer) to
>>> > import the OME-TIFF data produced by our imaging software.
>>>
>>> Yes, it is safe to delete loci_tools.jar. My work last year on enabling
>>> multiple update sites introduced the bug that removing files from update
>>> sites does not mark them as obsolete if you updated the files
>>> successfully
>>> before. We just did not hit that bug because we did not remove files in
>>> a
>>> long time ;-)
>>>
>>> > Do you still have an idea when this problem might get solved?
>>>
>>> It is fixed in the source code, I just have to upload a new version (for
>>> which I need to be comfortable with the current state first, though ;-).
>>> Should be happening within the hour.
>>>
>>> Ciao,
>>> Dscho
>>>
>>
>> _______________________________________________
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>> ImageJ-devel at imagej.net
>> http://imagej.net/mailman/listinfo/imagej-devel
>>
>>
>
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