[ImageJ-devel] CellProfiler 2.0 / ImageJ 2.0

[Lee Kamentsky]

  OK, I just finished 4 days of hacking to get CellProfiler to read the 
@parameter tags. I also took the plugin that we use the most, 
"Tubeness", and converted it to use the tags and removed its gui code 
(dialog stuff + image display). The result: CellProfiler runs an ImageJ 
plugin, displaying the parameters (including input and output images) as 
settings in our module. In this case, "InputImage", "Sigma", "Use 
calibration" and "Output image" are the parameters. The result appears 
below, totally seamless.

Curtis, I'll probably give you two pipelines: one that runs on the 
current CellProfiler release with the old ImageJ and one that is my 
personal build with a bleeding-edge ImageJ 2.0 build. This reinforces 
the message we want to send:

Your plugin is the manifestation of your method or algorithm which is 
what's important to you.
Your plugin conforms to the ImageJ 2.0 standard.
Your method can be used by any software that accepts ImageJ 2.0 plugins.

How cool.

--Lee

ImageJ 2.0 / CellProfiler 2.0
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