[ImageJ-devel] CellProfiler 2.0 / ImageJ 2.0

[Adam Fraser]

Awesome work! I think this is a killer example of the type of integration
that ImageJ 2.0 is striving to promote and facilitate.

On Thu, Sep 23, 2010 at 2:32 PM, Lee Kamentsky <leek at broadinstitute.org>wrote:

>  OK, I just finished 4 days of hacking to get CellProfiler to read the
> @parameter tags. I also took the plugin that we use the most, "Tubeness",
> and converted it to use the tags and removed its gui code (dialog stuff +
> image display). The result: CellProfiler runs an ImageJ plugin, displaying
> the parameters (including input and output images) as settings in our
> module. In this case, "InputImage", "Sigma", "Use calibration" and "Output
> image" are the parameters. The result appears below, totally seamless.
>
> Curtis, I'll probably give you two pipelines: one that runs on the current
> CellProfiler release with the old ImageJ and one that is my personal build
> with a bleeding-edge ImageJ 2.0 build. This reinforces the message we want
> to send:
>
> Your plugin is the manifestation of your method or algorithm which is
> what's important to you.
> Your plugin conforms to the ImageJ 2.0 standard.
> Your method can be used by any software that accepts ImageJ 2.0 plugins.
>
> How cool.
>
> --Lee
>
> [image: ImageJ 2.0 / CellProfiler 2.0]
>
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>
>
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