[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #136

Fri Aug 10 10:32:58 CDT 2012

See <https://qa.nest-initiative.org/job/fiji-windows-core/136/changes>

Changes:

[stephan.preibisch] cuda usage is assigned, more debug for the paramters involved

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Checking prerequisites of (fiji.build.SubFake) jars/javac.jar <- src-plugins/javac/
Building (fiji.build.SubFake) jars/javac.jar <- src-plugins/javac/
Parsing src-plugins\javac\pom.xml
Compiling 250 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\javac
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C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\List.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\ListBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Log.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\MandatoryWarningHandler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Messages.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Name.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Options.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Pair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Position.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\PropagatedException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\com\sun\tools\javac\util\Warner.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\AbstractProcessor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\Completion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\Completions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\Filer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\FilerException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\Messager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\ProcessingEnvironment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\Processor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\RoundEnvironment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\SupportedAnnotationTypes.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\SupportedOptions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\annotation\processing\SupportedSourceVersion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\AnnotationMirror.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\AnnotationValue.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\AnnotationValueVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\Element.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\ElementKind.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\ElementVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\ExecutableElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\Modifier.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\Name.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\NestingKind.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\PackageElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\TypeElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\TypeParameterElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\UnknownAnnotationValueException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\UnknownElementException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\element\VariableElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\SourceVersion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\ArrayType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\DeclaredType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\ErrorType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\ExecutableType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\MirroredTypeException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\MirroredTypesException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\NoType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\NullType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\PrimitiveType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\ReferenceType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\TypeKind.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\TypeMirror.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\TypeVariable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\TypeVisitor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\UnknownTypeException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\type\WildcardType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\AbstractAnnotationValueVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\AbstractElementVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\AbstractTypeVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\ElementFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\ElementKindVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\Elements.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\ElementScanner6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\SimpleAnnotationValueVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\SimpleElementVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\SimpleTypeVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\TypeKindVisitor6.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\lang\model\util\Types.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\Diagnostic.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\DiagnosticCollector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\DiagnosticListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\FileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\ForwardingFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\ForwardingJavaFileManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\ForwardingJavaFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\JavaCompiler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\JavaFileManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\JavaFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\OptionChecker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\SimpleJavaFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\StandardJavaFileManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\StandardLocation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\Tool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\src\main\java\javax\tools\ToolProvider.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\javac\target\classes
Building (fiji.build.SubFake) jars/ij-app.jar <- jars/ij.jar modul...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/ij-app.jar <- plugins/Fi...
Building (fiji.build.ExecuteProgram) jars/ij-app.jar <- plugins/Fi...
Executing: 'sh' './bin/ImageJ.sh' '--update' 'update' 'jars/ij-app.jar'
Executing (win32 on win64 using SYSWOW64\cmd.exe): 'C:\Windows\SYSWOW64\cmd.exe' '/C' 'sh' './bin/ImageJ.sh' '--update' 'update' 'jars/ij-app.jar'
Loading the remote ImageJ updater
Updating the index of available files (Updating from ImageJ site: http://update.imagej.net/) 
Updating the index of available files 0/1
Updating from ImageJ site: http://update.imagej.net/ done
Czechsummer (jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar) 
jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/ij-updater-core-2.0.0-SNAPSHOT.jar) 
jars/ij-updater-core-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/ij-core-2.0.0-SNAPSHOT.jar) 
jars/ij-core-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/log4j-1.2.14.jar) 
jars/log4j-1.2.14.jar done
Czechsummer (jars/slf4j-log4j12-1.5.10.jar) 
jars/slf4j-log4j12-1.5.10.jar done
Czechsummer (jars/slf4j-api-1.5.10.jar) 
jars/slf4j-api-1.5.10.jar done
Czechsummer (jars/sezpoz-1.9.jar) 
jars/sezpoz-1.9.jar done
Done: Czechsummer

Downloading... (jars/ij-updater-core-2.0.0-SNAPSHOT.jar) 
Downloading... 106665/1168843
jars/ij-updater-core-2.0.0-SNAPSHOT.jar done
Downloading... (jars/miglayout-3.7.3.1-swing.jar) 
Downloading... 257983/1168843
jars/miglayout-3.7.3.1-swing.jar done
Downloading... (jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar) 
Downloading... 337047/1168843
jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar done
Downloading... (jars/log4j-1.2.14.jar) 
Downloading... 405821/1168843
Downloading... 537597/1168843
Downloading... 740416/1168843
jars/log4j-1.2.14.jar done
Downloading... (jars/ij-core-2.0.0-SNAPSHOT.jar) 
Downloading... 972661/1168843
jars/ij-core-2.0.0-SNAPSHOT.jar done
Downloading... (jars/eventbus-1.4.jar) 
jars/eventbus-1.4.jar done
Downloading... (jars/sezpoz-1.9.jar) 
Downloading... 1135492/1168843
jars/sezpoz-1.9.jar done
Downloading... (jars/slf4j-log4j12-1.5.10.jar) 
jars/slf4j-log4j12-1.5.10.jar done
Downloading... (jars/slf4j-api-1.5.10.jar) 
jars/slf4j-api-1.5.10.jar done
Done: Downloading...

java.lang.reflect.InvocationTargetException
	at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
	at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
	at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
	at java.lang.reflect.Method.invoke(Method.java:597)
	at fiji.updater.Adapter.invoke(Adapter.java:407)
	at fiji.updater.Adapter.firstTime(Adapter.java:229)
	at fiji.updater.Adapter.runCommandLineUpdater(Adapter.java:180)
	at fiji.updater.Main.main(Main.java:10)
Caused by: java.io.IOException: Could not move '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/update\jars\miglayout-3.7.3.1-swing.jar'> to '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/.\jars\miglayout-3.7.3.1-swing.jar'>
	at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:281)
	at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:269)
	at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:255)
	... 8 more
Could not download the ImageJ Updater!
Checking prerequisites of (fiji.build.SubFake) plugins/Image_5D.jar <- modules/imag...
Checking prerequisites of (fiji.build.SubFake) plugins/TrackMate_.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/TrackMate_.jar <- src-plugin...
Parsing src-plugins\TrackMate_\pom.xml
Parsing C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.pom
Parsing C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.pom
Parsing C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.pom
Parsing C:\Users\jenkins\.m2\repository\loci\pom-scifio\4.4-SNAPSHOT\pom-scifio-4.4-20120628.152121-51.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-parent\1.5.10\slf4j-parent-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.pom
Parsing C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-log4j12\1.5.10\slf4j-log4j12-1.5.10.pom
Parsing C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.pom
Parsing C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.pom
Parsing C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.pom
Parsing C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.pom
Parsing C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.pom
Parsing C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\serializer\2.7.1\serializer-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\apache\4\apache-4.pom
Parsing C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.pom
Parsing C:\Users\jenkins\.m2\repository\xalan\xalan\2.7.1\xalan-2.7.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\itextpdf\itext-parent\1.0.0\itext-parent-1.0.0.pom
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.pom
Parsing C:\Users\jenkins\.m2\repository\org\sonatype\oss\oss-parent\7\oss-parent-7.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.pom
Parsing C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.pom
Parsing C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.pom
Parsing C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.pom
Parsing C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.pom
Parsing C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.pom
Compiling 185 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_
[-source, 1.5, -target, 1.5, -classpath, 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C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\MergingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costfunction\SplittingCostFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\CostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LAPTrackerCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\LinkingCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\costmatrix\TrackSegmentCostMatrixCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\FastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\AssignmentProblem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\HungarianAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\hungarian\MunkresKuhnAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\NearestNeighborTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\kdtree\SpotNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPTrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\LAPUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleFastLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SimpleLAPTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\SpotTracker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\tracking\TrackerSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateModelChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMateSelectionChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\TrackMate_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\DefaultFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TMUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\util\TrackSplitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\AbstractTrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\HyperStackDisplayer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotEditTool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\SpotOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\hyperstack\TrackOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotDisplayer3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\SpotGroupNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\threedviewer\TrackDisplayNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateModelView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\TrackMateSelectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\FeaturePlotSelectionPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\InfoPane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\JGraphXAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxScaledLabelShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxSideTextShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackGraphLayout.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\mxTrackSchemeSvgCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SaveAction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotFeatureGrapher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\SpotImageUpdater.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemePopupMenu.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\TrackSchemeToolbar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeRenderer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeries.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\fiji\plugin\trackmate\visualization\trackscheme\XYEdgeSeriesCollection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\gauss\DifferenceOfGaussianRealNI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\algorithm\laplace\LoGKernelFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\AbstractSpecialCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\CoordsCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DiscCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\DomainCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\SphereCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\mpicbg\imglib\cursor\special\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\annotations\XYTextSimpleAnnotation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\ExportableChartPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\renderer\InterpolatePaintScale.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\chart\util\ChartExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\src\main\java\org\jfree\data\statistics\LogHistogramDataset.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\TrackMate_\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\batik\batik\1.8\batik-1.8.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcmail-jdk14\138\bcmail-jdk14-138.jar;C:\Users\jenkins\.m2\repository\bouncycastle\bcprov-jdk14\138\bcprov-jdk14-138.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\com\lowagie\itext\2.1.5\itext-2.1.5.jar;C:\Users\jenkins\.m2\repository\com\itextpdf\itextpdf\5.1.1\itextpdf-5.1.1.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\org\jfree\jcommon\1.0.17\jcommon-1.0.17.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom\1.1.3\jdom-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jdom\jdom-contrib\1.1.3\jdom-contrib-1.1.3.jar;C:\Users\jenkins\.m2\repository\org\jfree\jfreechart\1.0.14\jfreechart-1.0.14.jar;C:\Users\jenkins\.m2\repository\jgrapht\jgrapht-jdk1.6\0.8.1\jgrapht-jdk1.6-0.8.1.jar;C:\Users\jenkins\.m2\repository\jgraph\jgraphx\1.10.0.3\jgraphx-1.10.0.3.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.jar;C:\Users\jenkins\.m2\repository\javax\servlet\servlet-api\2.5\servlet-api-2.5.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\xml-apis\xml-apis\1.3.04\xml-apis-1.3.04.jar
Checking prerequisites of (fiji.build.SubFake) plugins/Differentials_.jar <- src-pl...
Building (fiji.build.SubFake) plugins/Differentials_.jar <- src-pl...
Parsing src-plugins\Differentials_\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\src\main\java\Differentials_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Differentials_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Sync_Win.jar <- src-plugins/...
Building (fiji.build.SubFake) plugins/Sync_Win.jar <- src-plugins/...
Parsing src-plugins\Sync_Win\pom.xml
Compiling 12 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\DisplayChangeEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\DisplayChangeListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IJEventMulticaster.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IntField.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\IntSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenImage5DAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenImage5DWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenStackAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\OpenStackWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Measure_3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Windows.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\TextFieldFocus.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Sync_Win\src\main\java\Sync_Windows.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/FeatureJ_.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/FeatureJ_.jar <- src-plugins...
Parsing src-plugins\FeatureJ_\pom.xml
Compiling 11 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_About.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Derivatives.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Edges.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Hessian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Laplacian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Options.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Panel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Statistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Structure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\src\main\java\FJ_Website.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\FeatureJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Thread_Killer.jar <- src-plu...
Building (fiji.build.SubFake) plugins/Thread_Killer.jar <- src-plu...
Parsing src-plugins\Thread_Killer\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\src\main\java\Thread_Killer.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Thread_Killer\src\main\java\Thread_Killer.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Directionality_.jar <- src-p...
Building (fiji.build.SubFake) plugins/Directionality_.jar <- src-p...
Parsing src-plugins\Directionality_\pom.xml
Parsing C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.pom
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\src\main\java\fiji\analyze\directionality\Directionality_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Directionality_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/LSM_Reader.jar <- src-plugin...
Building (fiji.build.SubFake) plugins/LSM_Reader.jar <- src-plugin...
Parsing src-plugins\LSM_Reader\pom.xml
Compiling 6 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\LSM_Reader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\ChannelNamesAndColors.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\CZLSMInfo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\ImageDirectory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\info\LSMFileInfo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\Reader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\LSM_Reader\src\main\java\org\imagearchive\lsm\reader\Reader.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Bug_Submitter.jar <- src-plu...
Building (fiji.build.SubFake) plugins/Bug_Submitter.jar <- src-plu...
Parsing src-plugins\Bug_Submitter\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Updater\target\Fiji_Updater-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Bug_Submitter\src\main\java\Bug_Submitter\Bug_Submitter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/MosaicJ_.jar <- src-plugins/...
Building (fiji.build.SubFake) plugins/MosaicJ_.jar <- src-plugins/...
Parsing src-plugins\MosaicJ_\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\src\main\java\MosaicJ_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\MosaicJ_\src\main\java\MosaicJ_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Building (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Parsing src-plugins\SPIM_Registration\pom.xml
Parsing C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.pom
Parsing C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.pom
Parsing C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.pom
Parsing C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
	at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
	at java.net.URL.openStream(URL.java:1010)
	at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
	at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
	at fiji.build.minimaven.POM.download(POM.java:104)
	at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
	at fiji.build.minimaven.POM.getDependencies(POM.java:409)
	at fiji.build.minimaven.POM.getDependencies(POM.java:384)
	at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
	at fiji.build.SubFake.action(SubFake.java:183)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of scifio
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 143 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.15\jcommon-1.0.15.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:126: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
				this.fftConvolution1.setExtendImageByKernelSize( false );
				                    ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:131: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
				this.fftConvolution2.setExtendImageByKernelSize( false );
				                    ^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java:314: cannot find symbol
symbol  : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
		t2.setExtendImageByKernelSize( false );
		  ^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
	at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
	at fiji.build.minimaven.POM.build(POM.java:223)
	at fiji.build.minimaven.POM.buildJar(POM.java:164)
	at fiji.build.SubFake.action(SubFake.java:184)
	at fiji.build.Rule.make(Rule.java:195)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Rule.makePrerequisites(Rule.java:333)
	at fiji.build.Rule.make(Rule.java:189)
	at fiji.build.Rule.make(Rule.java:175)
	at fiji.build.Fake.make(Fake.java:242)
	at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
	in rule (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
	in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure