[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #137
Jenkins Daemon
jenkins at qa.nest-initiative.org
Fri Aug 10 14:03:52 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-windows-core/137/changes>
Changes:
[stephan.preibisch] removed comments
[stephan.preibisch] Added debug output
------------------------------------------
[...truncated 591 lines...]
Processing 8 file(s) from jars\ij-launcher.jar to jars\ij-launcher.jar.new.
Transformed 4 file(s).
% Total % Received % Xferd Average Speed Time Time Time Current
Dload Upload Total Spent Left Speed
0 0 0 0 0 0 0 0 --:--:-- --:--:-- --:--:-- 0
2 571k 2 13486 0 0 40990 0 0:00:14 --:--:-- 0:00:14 119k
33 571k 33 192k 0 0 135k 0 0:00:04 0:00:01 0:00:03 160k
95 571k 95 547k 0 0 232k 0 0:00:02 0:00:02 --:--:-- 255k
100 571k 100 571k 0 0 241k 0 0:00:02 0:00:02 --:--:-- 266k
Checking prerequisites of (fiji.build.ExecuteProgram) ImageJ <- plugins/Fiji_Update...
Building (fiji.build.ExecuteProgram) fiji <- ImageJ
Executing: 'bin/copy-file.bsh' 'ImageJ' 'fiji'
Checking prerequisites of (fiji.build.SubFake) plugins/registration_3d.jar <- src-p...
Building (fiji.build.SubFake) plugins/registration_3d.jar <- src-p...
Parsing src-plugins\registration_3d\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d\src\main\java\registration3d\Fast_FourierTransform.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\registration_3d\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) jars/ij-app.jar <- jars/ij.jar modul...
Building (fiji.build.SubFake) jars/ij-app.jar <- jars/ij.jar modul...
Checking prerequisites of (fiji.build.ExecuteProgram) jars/ij-app.jar <- plugins/Fi...
Building (fiji.build.ExecuteProgram) jars/ij-app.jar <- plugins/Fi...
Executing: 'sh' './bin/ImageJ.sh' '--update' 'update' 'jars/ij-app.jar'
Executing (win32 on win64 using SYSWOW64\cmd.exe): 'C:\Windows\SYSWOW64\cmd.exe' '/C' 'sh' './bin/ImageJ.sh' '--update' 'update' 'jars/ij-app.jar'
Loading the remote ImageJ updater
Updating the index of available files (Updating from ImageJ site: http://update.imagej.net/)
Updating the index of available files 0/1
Updating from ImageJ site: http://update.imagej.net/ done
Czechsummer (jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar)
jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/ij-updater-core-2.0.0-SNAPSHOT.jar)
jars/ij-updater-core-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/ij-core-2.0.0-SNAPSHOT.jar)
jars/ij-core-2.0.0-SNAPSHOT.jar done
Czechsummer (jars/log4j-1.2.14.jar)
jars/log4j-1.2.14.jar done
Czechsummer (jars/slf4j-log4j12-1.5.10.jar)
jars/slf4j-log4j12-1.5.10.jar done
Czechsummer (jars/slf4j-api-1.5.10.jar)
jars/slf4j-api-1.5.10.jar done
Czechsummer (jars/sezpoz-1.9.jar)
jars/sezpoz-1.9.jar done
Done: Czechsummer
Downloading... (jars/ij-updater-core-2.0.0-SNAPSHOT.jar)
Downloading... 98385/1168843
jars/ij-updater-core-2.0.0-SNAPSHOT.jar done
Downloading... (jars/miglayout-3.7.3.1-swing.jar)
Downloading... 217236/1168843
jars/miglayout-3.7.3.1-swing.jar done
Downloading... (jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar)
Downloading... 271511/1168843
Downloading... 372972/1168843
jars/ij-ui-swing-updater-2.0.0-SNAPSHOT.jar done
Downloading... (jars/log4j-1.2.14.jar)
Downloading... 487241/1168843
Downloading... 710097/1168843
jars/log4j-1.2.14.jar done
Downloading... (jars/ij-core-2.0.0-SNAPSHOT.jar)
Downloading... 870541/1168843
jars/ij-core-2.0.0-SNAPSHOT.jar done
Downloading... (jars/eventbus-1.4.jar)
Downloading... 1084134/1168843
jars/eventbus-1.4.jar done
Downloading... (jars/sezpoz-1.9.jar)
jars/sezpoz-1.9.jar done
Downloading... (jars/slf4j-log4j12-1.5.10.jar)
jars/slf4j-log4j12-1.5.10.jar done
Downloading... (jars/slf4j-api-1.5.10.jar)
Downloading... 1168843/1168843
jars/slf4j-api-1.5.10.jar done
Done: Downloading...
java.lang.reflect.InvocationTargetException
at sun.reflect.NativeMethodAccessorImpl.invoke0(Native Method)
at sun.reflect.NativeMethodAccessorImpl.invoke(NativeMethodAccessorImpl.java:39)
at sun.reflect.DelegatingMethodAccessorImpl.invoke(DelegatingMethodAccessorImpl.java:25)
at java.lang.reflect.Method.invoke(Method.java:597)
at fiji.updater.Adapter.invoke(Adapter.java:407)
at fiji.updater.Adapter.firstTime(Adapter.java:229)
at fiji.updater.Adapter.runCommandLineUpdater(Adapter.java:180)
at fiji.updater.Main.main(Main.java:10)
Caused by: java.io.IOException: Could not move '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/update\jars\miglayout-3.7.3.1-swing.jar'> to '<https://qa.nest-initiative.org/job/fiji-windows-core/ws/.\jars\miglayout-3.7.3.1-swing.jar'>
at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:281)
at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:269)
at imagej.updater.core.Installer.moveUpdatedIntoPlace(Installer.java:255)
... 8 more
Could not download the ImageJ Updater!
Checking prerequisites of (fiji.build.SubFake) plugins/ToAST_.jar <- src-plugins/To...
Building (fiji.build.SubFake) plugins/ToAST_.jar <- src-plugins/To...
Parsing src-plugins\ToAST_\pom.xml
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\parObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\ToAST25_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\ToAST25_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\ToAST_\src\main\java\ToAST25_.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Descriptor_based_registratio...
Building (fiji.build.SubFake) plugins/Descriptor_based_registratio...
Parsing src-plugins\Descriptor_based_registration\pom.xml
Parsing C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.pom
Parsing C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.pom
Parsing C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
at fiji.build.minimaven.POM.download(POM.java:104)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
at fiji.build.minimaven.POM.getDependencies(POM.java:409)
at fiji.build.minimaven.POM.getDependencies(POM.java:418)
at fiji.build.minimaven.POM.getDependencies(POM.java:384)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
at fiji.build.SubFake.action(SubFake.java:183)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of scifio
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
at fiji.build.minimaven.POM.download(POM.java:104)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
at fiji.build.minimaven.POM.getDependencies(POM.java:409)
at fiji.build.minimaven.POM.getDependencies(POM.java:418)
at fiji.build.minimaven.POM.getDependencies(POM.java:384)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
at fiji.build.SubFake.action(SubFake.java:183)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci-common/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci-common
Parsing C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120810.090417-139.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
at fiji.build.minimaven.POM.download(POM.java:104)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
at fiji.build.minimaven.POM.getDependencies(POM.java:409)
at fiji.build.minimaven.POM.getDependencies(POM.java:418)
at fiji.build.minimaven.POM.getDependencies(POM.java:384)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
at fiji.build.SubFake.action(SubFake.java:183)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/loci_plugins/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of loci_plugins
Parsing C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.pom
Parsing C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.pom
Parsing C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.pom
Parsing C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.pom
Parsing C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.pom
Parsing C:\Users\jenkins\.m2\repository\org\apache\commons\commons-parent\5\commons-parent-5.pom
Parsing C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.pom
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
at fiji.build.minimaven.POM.download(POM.java:104)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
at fiji.build.minimaven.POM.getDependencies(POM.java:409)
at fiji.build.minimaven.POM.getDependencies(POM.java:418)
at fiji.build.minimaven.POM.getDependencies(POM.java:384)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
at fiji.build.SubFake.action(SubFake.java:183)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of ome-xml
Compiling 143 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, 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C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120810.090234-150.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120810.090301-150.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120810.090320-107.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:128: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
this.fftConvolution1.setExtendImageByKernelSize( false );
^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:133: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
this.fftConvolution2.setExtendImageByKernelSize( false );
^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java:319: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
t2.setExtendImageByKernelSize( false );
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:223)
at fiji.build.minimaven.POM.build(POM.java:177)
at fiji.build.minimaven.POM.buildJar(POM.java:164)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule (fiji.build.SubFake) plugins/Descriptor_based_registratio...
in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure
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