[ImageJ-builds] Build failed in Jenkins: fiji-windows-core #135
Jenkins Daemon
jenkins at qa.nest-initiative.org
Fri Aug 10 10:28:13 CDT 2012
See <https://qa.nest-initiative.org/job/fiji-windows-core/135/changes>
Changes:
[stephan.preibisch] Deconvolution works as chunk or in blocks, ready for CUDA
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[...truncated 386 lines...]
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/ome-xml-4.4-20120810.090301-150.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/ome-xml-4.4-20120810.090301-150.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/ome-xml/4.4-SNAPSHOT/ome-xml-4.4-20120810.090301-150.jar
Downloading ome-xml
Trying to download http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
java.io.FileNotFoundException: http://dev.loci.wisc.edu/maven2/releases/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
at sun.net.www.protocol.http.HttpURLConnection.getInputStream(HttpURLConnection.java:1434)
at java.net.URL.openStream(URL.java:1010)
at fiji.build.minimaven.BuildEnvironment.download(BuildEnvironment.java:404)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:301)
at fiji.build.minimaven.BuildEnvironment.downloadAndVerify(BuildEnvironment.java:259)
at fiji.build.minimaven.POM.download(POM.java:104)
at fiji.build.minimaven.POM.maybeDownloadAutomatically(POM.java:639)
at fiji.build.minimaven.POM.getDependencies(POM.java:409)
at fiji.build.minimaven.POM.getDependencies(POM.java:418)
at fiji.build.minimaven.POM.getDependencies(POM.java:384)
at fiji.build.minimaven.POM.downloadDependencies(POM.java:92)
at fiji.build.SubFake.action(SubFake.java:183)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/maven-metadata.xml
Checking for new snapshot of scifio
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120810.090320-107.pom.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120810.090320-107.pom
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120810.090320-107.jar.sha1
Trying to download http://dev.loci.wisc.edu/maven2/snapshots/loci/scifio/4.4-SNAPSHOT/scifio-4.4-20120810.090320-107.jar
Downloading scifio
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\src\main\java\anisotropic_diffusion\Anisotropic_Diffusion_2D.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Compiling 9 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\CholeskyDecomposition.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\EigenvalueDecomposition.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\examples\MagicSquareExample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\LUDecomposition.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\Matrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\QRDecomposition.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\SingularValueDecomposition.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\test\TestMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\util\Maths.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\classes
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\src\main\java\Jama\Matrix.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 26 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\Debug.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\debugging\Object_Inspector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\JNI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\statistics\RoiStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\AbstractTool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\AbstractTrackingTool.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\SliceListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\SliceObserver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\ToolToggleListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\tool\ToolWithOptions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\ArrayBase.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\DoubleArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\FloatArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\AbstractAnnotation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\CommandFinderBase.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\GenericDialogPlus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\JFrameCommandFinder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\JImagePanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\OverlayedImageCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\IntArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\Levenshtein.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\MenuItemDiverter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\MenuItemHelper.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\SplitString.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\TicToc.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\ij\gui\ShapeRoiHelper.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\src\main\java\fiji\util\gui\JFrameCommandFinder.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 22 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\Binomial.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\BoundsCheckedFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\ConjugateDirectionSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\ConjugateGradientSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\DifferentialEvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\ErrorFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\GammaFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\GeneralizedDEOptimizer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\LineFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MachineAccuracy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MathUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MersenneTwisterFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MFWithGradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MultivariateFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\MultivariateMinimum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\NumericalDerivative.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\OrthogonalLineFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\OrthogonalSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\StochasticOSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\UnivariateFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\UnivariateMinimum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\src\main\java\pal\math\UrnModel.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\classes
Compiling 190 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\Byte3DArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\ByteProbability.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\Connectivity2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\PixelStats.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\Points.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\Sparse3DByteArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\adt\Unsparse3DByteArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\amira\AmiraMeshDecoder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\amira\AmiraMeshEncoder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\amira\AmiraParameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\amira\AmiraTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\amira\AmiraTableEncoder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\client\ArchiveClient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\color\CIELAB.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\delaunay\DelaunayTriangulation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\delaunay\Pnt.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\delaunay\Simplex.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\delaunay\Triangulation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\BaseOfTests.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\Correlation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\Euclidean.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\MutualInformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\PixelPairs.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\TestCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\TestEuclidean.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\TestMutualInformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\Thresholded.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\distance\TwoValues.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\RoiEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\RoiListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\RoiWatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\SliceEvent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\SliceListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\events\SliceWatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\ComputeCurvatures.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\GaussianGenerationCallback.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\HessianEvalueProcessor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\SigmaPalette.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\SurfacenessProcessor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\features\TubenessProcessor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\gui\GuiBuilder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BEPBBinBoundariesInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BEPBInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BEPBModelInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BinBoundariesComputation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BinBoundariesInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\BinClassificationInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\DistributionInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\Inference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\InferenceCaller.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\LogFuncs.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\MAPInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\inference\ModelInference.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\javax\media\j3d\RenderingError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\javax\media\j3d\RenderingErrorListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\AffineFromLandmarks.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\BooksteinFromLandmarks.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\FineTuneProgressListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\FineTuneThread.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\NamedPointSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\NamedPointWorld.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\NamePoints.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\ProgressCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\ProgressWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\RegistrationResult.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\RigidFromLandmarks.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\TestLoading.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\landmarks\TransformationAttempt.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\leica\LeicaSPReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Bookstein.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Eigensystem2x2Double.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Eigensystem2x2Float.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Eigensystem3x3Double.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Eigensystem3x3Float.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\FloatMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\JacobiFloat.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\NormalEstimator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\TestEigenvalueDecompositions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Tetrahedron.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\TransformIO.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\nrrd\NrrdHeader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\nrrd\NrrdInfo.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\oldsegmenters\AutoLabeller.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\oldsegmenters\AutoLabellerNaive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\oldsegmenters\LabelBinaryOps.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\oldsegmenters\SegmentatorModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\oldsegmenters\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\Convolve3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\DistanceTransform3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\FindMinima.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\MinMaxMedian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\Rebin.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\process3d\Smooth.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\PaneOwner.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\ThreePaneContainer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\ThreePaneCrop.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\ThreePaneCropCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\ThreePanes.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\stacks\ThreePanesCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\Arrow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\ArrowDisplayer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\BatchOpener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\Bresenham3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\CMTKTransformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\CombinationGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\FileAndChannel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\FileCreation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\FindConnectedRegions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\ImageCalculatorRevised.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\LabelFilenameFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\Limits.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\ModelessQuestions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\opencsv\CSVReader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\opencsv\CSVWriter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\OverlayRegistered.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\Penalty.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\RGBToLuminance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\RohlfingSBA.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\StupidLog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\TestFindConnectedRegions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\TestPenalty.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\WindowHelpers.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\util\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\FileGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\gui\Console.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\gui\FileGroupDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\gui\ProgressIndicator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\ImageMetaData.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\AverageBrain.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\CenterTransformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\EndModule.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\GreyTransformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\Label.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\LabelCenterTransformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\LabelDiffusionTransformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\Module.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\ModuleListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\Resample.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\ResampleLabels.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\Show.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\SplitChannels.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\State.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\TissueStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\module\TransformImages.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\app\Options.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\BenesNamedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\BilateralFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\BinaryInterpolator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\DiffusionInterpol2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\edge\CircleIterators.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\edge\SphereIterators.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\ElasticTransformedImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\FloatMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\InterpolatedImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\MaxEntHistogram.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\NaiveResampler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\oldregistration\RegistrationAlgorithm.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\PointList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\RegistrationOptimizer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\RigidRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\Border.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\CustomCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\CustomStackWindow.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\ImageButton.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\InfoPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\MaterialList.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\SegmentationEditor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\Sidebar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\segment\Thresholder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\SegmentationViewerCanvas.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\ShowHistogram.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\TestFastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\TestRigidRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\TransformedImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\BooksteinTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\BoundsInclusive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\FastMatrixTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\OrderedTransformations.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\Threshold.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\transforms\Transform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\vib\VIB.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\src\main\java\video\VideoStack.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 32 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\color\Convert_Red_To_Magenta_Clipboard.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\denoise\ROF_Denoise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Linear_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\drawing\Radial_Gradient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\AreaCalculations.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\help\Context_Help.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\EDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\process3d\SEDT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Binary_to_Point_Selection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Rounded_Rectangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\selection\Select_Bounding_Box.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\CompositeConverter2.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Dynamic_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Hyperstack_rearranger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\stacks\Radial_Reslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Circle_Fitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\CurrentSlice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\DistanceComparator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Fiji_Uploader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\KDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\NNearestNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Leaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\Node.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\NonLeaf.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\node\SimpleNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\RadiusNeighborSearch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\Recent_Commands.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\util\TestKDTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\fiji\geom\Shape_Index_Map.java:17: warning: unmappable character for encoding Cp1252
* curvature scales,� Image Vision Comput, vol. 10, no. 8,
^
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\src\main\java\Retinex_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
1 warning
Compiling 59 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120806.234352-138.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\DeltaVision_Converter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\CollectionStitchingImgLib.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ComparePair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\AveragePixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\BlendingPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\Fusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\ImageInterpolation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MaxPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MedianPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\MinPixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\OverlayFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\fusion\PixelFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\GlobalOptimization.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImageCollectionElement.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\ImagePlusTimePoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingImgLib.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PairWiseStitchingResult.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\Peak.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\PointMatchStitching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\StitchingParameters.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\mpicbg\stitching\TileConfigurationStitching.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\GridType.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Grid.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\plugin\Stitching_Pairwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CommonFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\CrossCorrelationResult3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\FloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\GridLayout.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\ImageInformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\CoordinateTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\ErrorStatistic.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleCoordinateTransform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\InvertibleModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Model.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NoninvertibleModelException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\NotEnoughDataPointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PaintInvertibleCoordinateTransformThread.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Point.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\PointMatch.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\Tile.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TileConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\model\TranslationModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\OverlapProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Point3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\stitching\Quicksortable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitching_3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Collection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Directory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Image_Grid_Sequence.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Many_Images.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\src\main\java\Stitch_Multiple_Series_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120806.234352-138.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 66 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\ByteArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\DoubleArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\FloatArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\IntArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\LongArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\array\ShortArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\color\Palette.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\color\Wave2ARGB.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Differentiator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Edges.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Hessian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Laplacian.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Smoother.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Statistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\feature\Structure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\fourier\FFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Aspects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Axes.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Borders.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\ByteImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\ColorImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Coordinates.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Dimensions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\FloatImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Image.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\ShortImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\BinomialGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\ExponentialGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\GammaGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\GaussianGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\PoissonGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\RandomGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\Randomizer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\random\UniformGenerator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\segment\Extremizer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\segment\Thresholder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\segment\ZeroCrosser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Bounds.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Circle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Ellipse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Point.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Polygon.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Rectangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Region.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Shape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Spline.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\shape\Square.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Affine.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Crop.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Embed.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Mirror.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Prefilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Rotate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Scale.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Transform.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Translate.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\transform\Turn.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\FMath.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\Formatter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\I5DResource.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\ImageScience.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\Messenger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\MouseCursor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\Progressor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\Timer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\utility\VTKResource.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\src\main\java\imagescience\image\Image.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 37 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120806.234352-138.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\AttributeClassPair.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomForest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\BalancedRandomTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\GiniFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\InformationGainFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\SplitFunction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\Splitter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\ai\VotesCollector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\Benchmark.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\DataCache.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomForest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRandomTree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfBagging.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\FastRfUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\SplitCriteria.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\hr\irb\fastRandomForest\VotesCollector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStack3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\FeatureStackArray.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Entropy_Filter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Kuwahara.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\filters\Lipschitz_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\ImageOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\AdjustedRandError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClassificationStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\ClusteredWarpingMismatches.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\Metrics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\PixelError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\RandError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingError.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\metrics\WarpingResults.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\RoiListOverlay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Trainable_Segmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\PrincipalComponentAnalysis.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\utils\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\WekaSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\src\main\java\trainableSegmentation\Weka_Segmentation.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Trainable_Segmentation\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\Anisotropic_Diffusion_2D\target\Anisotropic_Diffusion_2D-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\Image_5D\1.2.5\Image_5D-1.2.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Stitching_\target\Stitching_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\loci\bio-formats\4.4-SNAPSHOT\bio-formats-4.4-20120628.152312-122.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\Users\jenkins\.m2\repository\commons-logging\commons-logging\1.1.1\commons-logging-1.1.1.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\imagescience\target\imagescience-2.4.0.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-algorithms\2.0.0-SNAPSHOT\imglib2-algorithms-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\loci_plugins\4.4-SNAPSHOT\loci_plugins-4.4-20120806.234352-138.jar;C:\Users\jenkins\.m2\repository\log4j\log4j\1.2.14\log4j-1.2.14.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\loci\mdbtools-java\4.4-SNAPSHOT\mdbtools-java-4.4-20120628.152154-132.jar;C:\Users\jenkins\.m2\repository\loci\metakit\4.4-SNAPSHOT\metakit-4.4-20120628.152303-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\essi-unidata\netcdf-java\4.0.41\netcdf-java-4.0.41.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\poi-loci\4.4-SNAPSHOT\poi-loci-4.4-20120628.152218-132.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) jars/imageware.jar <- src-plugins/im...
Building (fiji.build.SubFake) jars/imageware.jar <- src-plugins/im...
Parsing src-plugins\imageware\pom.xml
Compiling 30 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Access.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Buffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Builder.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\BytePointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ByteSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Convolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Display.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoublePointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\DoubleSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatPointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FloatSet.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\FMath.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ImageWare.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Pointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\Process.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortBuffer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortPointwise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortProcess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\src\main\java\imageware\ShortSet.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\imageware\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/Fiji_Developer.jar <- src-pl...
Building (fiji.build.SubFake) plugins/Fiji_Developer.jar <- src-pl...
Parsing src-plugins\Fiji_Developer\pom.xml
Parsing C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.pom
Parsing C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.pom
Parsing C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.pom
Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Skipping artifact tools (for javassist): not found
Warning: <https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar> overrides com.sun>tools
Parsing C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.pom
Parsing C:\Users\jenkins\.m2\repository\org\beanshell\beanshell\2.0b4\beanshell-2.0b4.pom
Parsing C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.pom
Parsing C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.pom
Parsing C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.pom
Parsing C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.pom
Parsing C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.pom
Parsing C:\Users\jenkins\.m2\repository\org\jruby\jruby-common\1.6.7.2\jruby-common-1.6.7.2.pom
Parsing C:\Users\jenkins\.m2\repository\org\jruby\shared\1.6.7.2\shared-1.6.7.2.pom
Compiling 121 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Box.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Cone.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomIndexedTriangleMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomLineMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomMeshNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomMultiMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomPointMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomQuadMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomTransparentTriangleMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\CustomTriangleMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\EdgeContraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\FullInfoMesh.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\MeshLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\MeshMaker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Mesh_Maker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Primitive.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Sphere.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\STLLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\Tube.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\BitStreamRead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\BitStreamWrite.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\Constants.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\ContextManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\DataBlock.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\u3d\U3DExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\WavefrontExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\customnode\WavefrontLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\AxisConstants.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\BehaviorCallback.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\ContentTransformer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\InteractiveBehavior.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\InteractiveViewPlatformTransformer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\Picker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\ViewPlatformTransformer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\behaviors\WaitForNextFrameBehavior.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ColorTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Content.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ContentConstants.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ContentCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ContentInstant.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ContentNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\contextmenu\ContextMenu.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\DefaultAnimatableUniverse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\DefaultUniverse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Executer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\gui\ContentCreatorDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\gui\InteractiveMeshDecimation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\gui\InteractiveTransformDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\gui\LUTDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\gui\PrimitiveDialogs.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\IJAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Image3DMenubar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Image3DUniverse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ImageCanvas3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ImageJ3DViewer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ImageWindow3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ImgLibVolume.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Install_J3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\MeshMaker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Mesh_Maker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\NoopAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Pipe.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\pointlist\PointListDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\pointlist\PointListPanel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\pointlist\PointListShape.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\RegistrationMenubar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\SaveSession.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ScenegraphDebugger.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shapes\BoundingBox.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shapes\BoundingSphere.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shapes\CoordinateSystem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shapes\Scalebar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shortcuts\ShortCutDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shortcuts\ShortCuts.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\shortcuts\ShortCutTable.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Test_Single_Voxel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\TimelapseListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\UIAdapter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\UniverseListener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\UniverseSettings.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\UniverseSynchronizer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Utils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Vector3.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\VectorString3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\ViewAdjuster.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ij3d\Volume.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\ImageJ_3D_Viewer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\AmiraSurface.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\MeshEditor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\MeshExporter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\MeshGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\MeshProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\Show_Colour_Surfaces.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\SmoothControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\isosurface\Triangulator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\marchingcubes\MCCube.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\marchingcubes\MCTriangulator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\AppearanceCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\Cube.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\CubeData.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\FilePreparer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\GeometryCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\OctreeDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\ShapeGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\octree\VolumeOctree.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\orthoslice\MultiOrthoGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\orthoslice\MultiOrthoslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\orthoslice\OrthoGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\orthoslice\Orthoslice.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\process3d\Smooth_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\surfaceplot\SurfacePlot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\surfaceplot\SurfacePlotGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\view4d\Timeline.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\view4d\TimelineGUI.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\AppearanceCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\GeometryCreator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\Mask.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\VoltexGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\VoltexVolume.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\src\main\java\voltex\VolumeRenderer.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 25 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\CheckClassVersions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\Command.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\command\CommandListenerPlus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Compile_and_Run.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiClassLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\FijiTools.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\FileDialogDecorator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\gui\JFileChooserDecorator.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Headless.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ1Patcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJHacker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\IJ_Alt_Key_Listener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\InspectJar.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\JavassistHelper.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Main.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MainClassForDebugging.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\Memory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\MemoryProfiler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\OtherInstance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\PlugInInstaller.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SampleImageLoader.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SetIcon.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\SimpleExecuter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\User_Plugins.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\src\main\java\fiji\ZLibAnalyzer.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 3 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\AbstractInterpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\RefreshScripts.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\src\main\java\common\ScriptRunner.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\src\main\java\BSH\BSH_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\src\main\java\BSH\Refresh_BSH_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Compiling 9 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CLI_.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\CustomFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\ImageFileFilter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\MacroRecord.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\OpenDirectory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Refresh_Macros.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Screenshot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\Slide_Show.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\src\main\java\CLI\TraceError.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Refresh_Clojure_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\src\main\java\Clojure\Clojure_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\src\main\java\JRuby\JRuby_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\src\main\java\JRuby\Refresh_JRuby_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\src\main\java\JRuby\JRuby_Interpreter.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\src\main\java\Javascript\Javascript_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\src\main\java\Javascript\Refresh_Javascript_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\src\main\java\Javascript\Javascript_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\src\main\java\Jython\Jython_Interpreter.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\src\main\java\Jython\Refresh_Jython_Scripts.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\src\main\java\Jython\Jython_Interpreter.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 2 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\src\main\java\fiji\scripting\java\PlugInExecutor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\src\main\java\fiji\scripting\java\Refresh_Javas.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\src\main\java\fiji\scripting\java\Refresh_Javas.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 38 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\BookmarkDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\BreakpointManager.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\CCellRenderer.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ClassNameFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ClojureTokenMaker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ClassCompletionProvider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ClassMethod.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ClassName.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ClassNames.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ConstructorParser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\DefaultProvider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ImportedClassObjects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ImportStatementsParser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\Item.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\KeywordsCompletion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\ObjStartCompletions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\completion\Package.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\DiffView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\EditorPane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ErrorHandler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ExceptionHandler.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\FileFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\FindAndReplaceDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ImageJMacroTokenMaker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\JTextAreaOutputStream.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\Languages.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\LogComponentCommits.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\MacroFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\MatlabTokenMaker.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\OpenSourceForMenuItem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ReadyForUpload.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\RecentFilesMenuItem.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\RunFijiBuild.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\Script_Editor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\ShowPluginChanges.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\StartDebugging.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\TextEditor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\src\main\java\fiji\scripting\TokenFunctions.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Compiling 5 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\Script_Editor-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\GraphicalMediaWikiClient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\MediaWikiClient.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\Prettify_Wiki_Screenshot.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\Upload_Image_To_Wiki.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\Wiki_Editor.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\BeanShell_Interpreter\target\BeanShell_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\CLI_\target\CLI_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Clojure_Interpreter\target\Clojure_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\JRuby_Interpreter\target\JRuby_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Javascript_\target\Javascript_-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jython_Interpreter\target\Jython_Interpreter-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Refresh_Javas\target\Refresh_Javas-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Script_Editor\target\Script_Editor-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\autocomplete\0.4\autocomplete-0.4.jar;C:\Users\jenkins\.m2\repository\org\beanshell\bsh\2.0b4\bsh-2.0b4.jar;C:\Users\jenkins\.m2\repository\org\clojure\clojure\1.3.0\clojure-1.3.0.jar;C:\Users\jenkins\.m2\repository\org\apache\commons\commons-math\3.0-SNAPSHOT\commons-math-3.0-20120702.214056-1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fake\target\fake-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-compat\target\fiji-compat-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-scripting\target\fiji-scripting-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2\2.0.0-SNAPSHOT\imglib2-2.0.0-20120703.224255-399.jar;C:\Users\jenkins\.m2\repository\net\imglib2\imglib2-ij\2.0.0-SNAPSHOT\imglib2-ij-2.0.0-20120703.224255-398.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\org\javassist\javassist\3.14.0-GA\javassist-3.14.0-GA.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\org\jruby\jruby\1.6.7.2\jruby-1.6.7.2.jar;C:\Users\jenkins\.m2\repository\rhino\js\1.7R2\js-1.7R2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\org\python\jython\2.5.2\jython-2.5.2.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\fifesoft\rsyntaxtextarea\1.4.1\rsyntaxtextarea-1.4.1.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\Wiki_Editor.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Developer\src\main\java\fiji\Wiki_Editor.java uses unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
Checking prerequisites of (fiji.build.SubFake) plugins/Color_Histogram.jar <- src-p...
Building (fiji.build.SubFake) plugins/Color_Histogram.jar <- src-p...
Parsing src-plugins\Color_Histogram\pom.xml
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\Color_Histogram\src\main\java\ColorHistogram_.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Checking prerequisites of (fiji.build.SubFake) plugins/CPU_Meter.jar <- src-plugins...
Building (fiji.build.SubFake) plugins/CPU_Meter.jar <- src-plugins...
Parsing src-plugins\CPU_Meter\pom.xml
Parsing C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.pom
Compiling 1 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\src\main\java\CPU_Meter.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\CPU_Meter\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\net\java\dev\jna\jna\3.2.7\jna-3.2.7.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Checking prerequisites of (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Building (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
Parsing src-plugins\SPIM_Registration\pom.xml
Parsing C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.pom
Compiling 16 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar,> -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Check_Directories.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Combine_SPIM_Projects.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Count_Files.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\DoubleSlider.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MaximumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\MinimumProjector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\OpenerGenericDialog.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Projector.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\Rename.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMExperiment.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMRegularStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIMVirtualStack.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\SPIM_Opener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\XMLReader.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\classes;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar>
Note: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\src\main\java\spimopener\GaussianStackFocuser.java uses or overrides a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Compiling 143 files in C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration
[-source, 1.5, -target, 1.5, -classpath, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar, -d, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Apply_External_Transformation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Bead_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Deconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Multi_View_Fusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\Regtest.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\FileOpenMenuEntry.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\GraphFrame.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\MouseListenerTimelapse.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\RegistrationStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\fiji\plugin\timelapsedisplay\TimeLapseDisplay.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\ICP.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\PointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\icp\SimplePointMatchIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\AbstractPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\exception\NoSuitablePointsException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LinkedPoint.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\LocalCoordinateSystemPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Matcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\ModelPriorSubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\Quaternion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SimpleMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\matcher\SubsetMatcher.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\FixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\RigidModelOld3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantAffineModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantFixedModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantModel.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel2D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantRigidModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\model\TranslationInvariantSimilarityModel3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\ModelPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\LinearDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\ManhattanDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SimilarityMeasure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\similarity\SquareDistance.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\SimplePointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\PointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\TestPointDescriptor.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\pointdescriptor\test\VirtualPointNode.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\ClusterReconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\Blending.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimple.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\BlendingSimpleFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\CombinedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\Entropy.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\entropy\EntropyFloatArray3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFast.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\EntropyFastFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\FusionControl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\GaussContentFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightener.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\IsolatedPixelWeightenerFactory.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalell.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionParalellMaxWeight.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequential.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\MappingFusionSequentialDifferentOutput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\PreDeconvolutionFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\fusion\SPIMImageFusion.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserException.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserGeneral.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ConfigurationParserSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ImgLibSaver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\IOFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ParsePattern.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\ProgramConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\SPIMConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\TextFileAccess.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\io\XMLFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\Java3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\PointMatchGeneric.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\SketchTikZFileObject.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationPhaseCorrelation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileConfigurationSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\mpicbg\TileSPIM.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\ExtractPSF.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution\LucyRichardsonMultiViewDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\AdjustInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\BayesMVDeconvolution.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Deconvolver.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRInput.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\preprocessing\AutomaticAngleSetup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\Reconstruction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\Bead.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\BeadStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\GlobalErrorStatisticsImpl.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorPairWise.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\error\ViewErrorStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\DoGMaximum.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\LaPlaceFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\bead\laplace\RejectStatistics.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\AbstractDetection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystem3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CoordSystemSecure3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\CorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\ModelBased3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\descriptor\SparseCorrespondenceExtraction.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\Detection.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionSegmentation.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\detection\DetectionView.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleiConfiguration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\Nucleus.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusIdentification.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\segmentation\NucleusStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ComponentProperties.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\threshold\ConnectedComponent.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewDataBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\registration\ViewStructure.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\segmentation\InteractiveDoG.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\simulation\SimulateBeadImage.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\FastMatrix.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\FastMatrixN.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\JacobiDouble.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Line.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Plane.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Point3d.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vib\math3d\Triangle.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\BeadTransformGroup.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Motion3D.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\PreviewRegistration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\Viewer3dFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationFunctions.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizationSketchTikZ.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\vis3d\VisualizeBeads.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\util\TransformUtils.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\MultiChannel_SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIMRegistrationAbstract.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration.java, C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\SPIM_Registration_File.java]
using the class path: C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\target\classes;C:\jenkins\workspace\fiji-windows-core\src-plugins\3D_Viewer\target\3D_Viewer-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\apple\AppleJavaExtensions\1.5\AppleJavaExtensions-1.5.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Fiji_Plugins\target\Fiji_Plugins-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\Jama\target\Jama-1.0.2.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Opener\target\SPIM_Opener-2.0.0-SNAPSHOT.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\VIB-lib\target\VIB-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\sun\clibwrapper_jiio\1.1\clibwrapper_jiio-1.1.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\fiji-lib\target\fiji-lib-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\com\jgoodies\forms\1.2.1\forms-1.2.1.jar;C:\Users\jenkins\.m2\repository\net\imagej\ij\1.46r\ij-1.46r.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib\2.0.0-SNAPSHOT\imglib-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-algorithms\2.0.0-SNAPSHOT\imglib-algorithms-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-ij\2.0.0-SNAPSHOT\imglib-ij-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\mpicbg\imglib-io\2.0.0-SNAPSHOT\imglib-io-2.0.0-20120704.052716-405.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core\1.5.2\j3d-core-1.5.2.jar;C:\Users\jenkins\.m2\repository\java3d\j3d-core-utils\1.5.2\j3d-core-utils-1.5.2.jar;C:\Users\jenkins\.m2\repository\loci\jai_imageio\4.4-SNAPSHOT\jai_imageio-4.4-20120628.152145-132.jar;C:\Users\jenkins\.m2\repository\jama\jama\1.0.2\jama-1.0.2.jar;C:\Users\jenkins\.m2\repository\net\sf\squirrel-sql\thirdparty-non-maven\java-cup\0.11a\java-cup-0.11a.jar;C:\Users\jenkins\.m2\repository\jfree\jcommon\1.0.16\jcommon-1.0.16.jar;C:\Users\jenkins\.m2\repository\jfree\jfreechart\1.0.13\jfreechart-1.0.13.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jsch\0.1.42\jsch-0.1.42.jar;C:\Users\jenkins\.m2\repository\junit\junit\4.5\junit-4.5.jar;C:\Users\jenkins\.m2\repository\com\jcraft\jzlib\1.0.7\jzlib-1.0.7.jar;C:\Users\jenkins\.m2\repository\loci\loci-common\4.4-SNAPSHOT\loci-common-4.4-20120806.234217-149.jar;C:\Users\jenkins\.m2\repository\loci\lwf-stubs\4.4-SNAPSHOT\lwf-stubs-4.4-20120628.152236-132.jar;C:\Users\jenkins\.m2\repository\edu\mines\mines-jtk\20100113\mines-jtk-20100113.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20111128\mpicbg-20111128.jar;C:\Users\jenkins\.m2\repository\mpicbg\mpicbg\20120621\mpicbg-20120621.jar;C:\Users\jenkins\.m2\repository\loci\ome-xml\4.4-SNAPSHOT\ome-xml-4.4-20120806.234242-149.jar;C:\jenkins\workspace\fiji-windows-core\src-plugins\pal-optimization\target\pal-optimization-2.0.0-SNAPSHOT.jar;C:\Users\jenkins\.m2\repository\org\pentaho\pentaho-commons\pentaho-package-manager\1.0.0\pentaho-package-manager-1.0.0.jar;C:\Users\jenkins\.m2\repository\loci\scifio\4.4-SNAPSHOT\scifio-4.4-20120806.234301-106.jar;C:\Users\jenkins\.m2\repository\org\slf4j\slf4j-api\1.5.10\slf4j-api-1.5.10.jar;<https://qa.nest-initiative.org/job/fiji-windows-core/ws/java\win64\jdk1.6.0_24\jre\..\lib\tools.jar;C>:\Users\jenkins\.m2\repository\java3d\vecmath\1.5.2\vecmath-1.5.2.jar;C:\Users\jenkins\.m2\repository\nz\ac\waikato\cms\weka\weka-dev\3.7.6\weka-dev-3.7.6.jar
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:126: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
this.fftConvolution1.setExtendImageByKernelSize( false );
^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\LRFFT.java:131: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
this.fftConvolution2.setExtendImageByKernelSize( false );
^
C:\jenkins\workspace\fiji-windows-core\src-plugins\SPIM_Registration\src\main\java\mpicbg\spim\postprocessing\deconvolution2\Block.java:314: cannot find symbol
symbol : method setExtendImageByKernelSize(boolean)
location: class mpicbg.imglib.algorithm.fft.FourierConvolution<mpicbg.imglib.type.numeric.real.FloatType,mpicbg.imglib.type.numeric.real.FloatType>
t2.setExtendImageByKernelSize( false );
^
Note: Some input files use or override a deprecated API.
Note: Recompile with -Xlint:deprecation for details.
Note: Some input files use unchecked or unsafe operations.
Note: Recompile with -Xlint:unchecked for details.
3 errors
fiji.build.minimaven.JavaCompiler$CompileError: Compile error: 1
at fiji.build.minimaven.JavaCompiler.call(JavaCompiler.java:37)
at fiji.build.minimaven.POM.build(POM.java:223)
at fiji.build.minimaven.POM.buildJar(POM.java:164)
at fiji.build.SubFake.action(SubFake.java:184)
at fiji.build.Rule.make(Rule.java:195)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Rule.makePrerequisites(Rule.java:333)
at fiji.build.Rule.make(Rule.java:189)
at fiji.build.Rule.make(Rule.java:175)
at fiji.build.Fake.make(Fake.java:242)
at fiji.build.Fake.main(Fake.java:56)
Compile error: 1
in rule (fiji.build.SubFake) plugins/SPIM_Registration.jar <- src...
in rule (fiji.build.All) all <- ImageJ fiji jars/VectorString.jar...
Build step 'Execute shell' marked build as failure
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