[ImageJ-bugs] [Bug 1043] New: The align rgb planes plug in does not work

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=1043

            Bug ID: 1043
           Summary: The align rgb planes plug in does not work
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: jeff.spector at nih.gov
                CC: jeff.spector at nih.gov

When I load an image and run the "align RGB planes" plugin (downloaded from
your website) the text in the imageJ bar flashes very quickly (so fast I can
not read it) and then nothing happens and the plugin does nothing. 
I installed the same plugin files to a "regular" imageJ and the plugin worked
perfectly (I tested it using the same image) 

so something is causing it to not work when using FIJI. 
If it helps, when I run it in FIJI the align rgb planes GUI never appears...

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.8.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: CHECK_TURNED_OFF

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150328005348)
Fiji: http://fiji.sc/update/ (last check:20150324232333)

Files not up-to-date:
  b732dbf2 (MODIFIED) 20150213144220 Contents/Info.plist
  bdc88860 (LOCAL_ONLY) 20140611190441 jars/MultipleKymograph_.class
  6128cb23 (LOCAL_ONLY) 20140611190442 jars/MultipleOverlay_ (2).class
  07c683b2 (LOCAL_ONLY) 20140611190442 jars/StackDifference_ (2).class
  8821a474 (LOCAL_ONLY) 20140611190443 jars/WalkingAverage_ (2).class
  1ad3be0d (LOCAL_ONLY) 20131114111332 jars/jpedalSTD.jar
  8f675b7b (LOCAL_ONLY) 20080612095048 plugins/Align_RGB_planes.class
  455de238 (LOCAL_ONLY) 20141110190011 plugins/Jama-1.0.3 copy.jar
  a5d02cb7 (LOCAL_ONLY) 20140612120910 plugins/Kymo_graph1001.jar
  aa5aa145 (LOCAL_ONLY) 20140619180813 plugins/MMReader_.jar
  946ffba8 (LOCAL_ONLY) 20140611190441 plugins/MultipleKymograph_.class
  1cc35aff (LOCAL_ONLY) 20140611194446 plugins/MultipleOverlay_ (2).class
  8fb74bae (LOCAL_ONLY) 20140611190442 plugins/MultipleOverlay_class.class
  77bb5c2d (LOCAL_ONLY) 20141110083600 plugins/SpeckleLib.jar
  87786c25 (LOCAL_ONLY) 20140611194503 plugins/StackDifference_ (2).class
  98992cd2 (LOCAL_ONLY) 20140611190442 plugins/StackDifference_class.class
  d3721d57 (LOCAL_ONLY) 20140611190443 plugins/WalkingAverage_.class

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