[ImageJ-bugs] [Bug 1042] New: Loading XML files from saved TrackMate files result in errors

bugzilla at fiji.sc bugzilla at fiji.sc
Tue Mar 31 10:11:37 CDT 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1042

            Bug ID: 1042
           Summary: Loading XML files from saved TrackMate files result in
                    errors
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: jeff.meteer at gmail.com
                CC: jeff.meteer at gmail.com

I use TrackMate to track particles and it works great. Since the lastest
update, when I save a file (defaults to .XML) and then load it back into FIJI,
there are problems. The first is that the spots are all solid circles instead
of outlined circles. The second is that I cannot display local tracks. I have
tried on two separate machines and it seems like a bug. I uploaded a sample
containing the original .tif and .XML files.

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.8.5
  java.version => 1.6.0_65
  java.vendor => Apple Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_65-b14-462-11M4609
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 20.65-b04-462
  java.vm.vendor => Apple Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => apple.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: null
  imagej.dir => /Users/jdm013/Desktop/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150328005348)
Fiji: http://fiji.sc/update/ (last check:20150324232333)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20141125111502 jars/jpedalSTD.jar

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