[ImageJ-bugs] [Bug 1129] New: Running Gaussian Blur filter from script editor broken - does not overwrite existing sigma + scaling settings in GUI

bugzilla at fiji.sc bugzilla at fiji.sc
Fri Jul 31 04:42:07 CDT 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=1129

            Bug ID: 1129
           Summary: Running Gaussian Blur filter from script editor broken
                    - does not overwrite existing sigma + scaling settings
                    in GUI
           Product: Fiji
           Version: unspecified
          Hardware: Macintosh
                OS: Mac OS
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: celinaeg at uw.edu
                CC: celinaeg at uw.edu

It looks like when using the script editor to run Gaussian Blur filter, the
macro interpreter doesn't capture the sigma parameter. When running GB through
the ImageJ GUI, everything works fine, but when I run GB through the editor the
sigma that was already in the GUI is the sigma that is used.

Here's the basic code that I'm using: 
IJ.run(imp, "Gaussian Blur...", "sigma = 0.0001 scaled")

Information about your version of Java:

  os.arch => x86_64
  os.name => Mac OS X
  os.version => 10.9.5
  java.version => 1.7.0_21
  java.vendor => Oracle Corporation
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.7.0_21-b12
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 23.21-b01
  java.vm.vendor => Oracle Corporation
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.CGraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.7
  sun.cpu.endian => little
  sun.desktop => null
  file.separator => /

The up-to-date check says: UP_TO_DATE

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to: /Library/Internet
Plug-Ins/JavaAppletPlugin.plugin/Contents/Home/
  imagej.dir => /Applications/Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150722045527)
Fiji: http://fiji.sc/update/ (last check:20150724215809)

Files not up-to-date:
  590a0a03 (LOCAL_ONLY) 20150727141828 macros/BatchMacro.ijm

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