[ImageJ-bugs] [Bug 989] New: HDF5 plugin doesnt load

bugzilla at fiji.sc bugzilla at fiji.sc
Wed Jan 21 09:58:14 CST 2015


http://fiji.sc/bugzilla/show_bug.cgi?id=989

            Bug ID: 989
           Summary: HDF5 plugin doesnt load
           Product: Fiji
           Version: unspecified
          Hardware: PC
                OS: Windows
            Status: NEW
          Severity: normal
          Priority: P4
         Component: Plugins
          Assignee: imagej-bugs at imagej.net
          Reporter: tll2120 at columbia.edu
                CC: tll2120 at columbia.edu

I installed Fiji and ran the updater.  Then I added the HDF5 plugin from the
manage sites window.  After I restarted Fiji, I tried to import a H5 file.  It
opens up to the log and shows /imaging:DATASET but then it never brings up the
java window to let me select the datasets I want to open.  I thought maybe it
was this computer but it also happens on the updated version of Fiji on my
MacBook Pro as well.  Any thought?  Thanks

Information about your version of Java:

  os.arch => amd64
  os.name => Windows 7
  os.version => 6.1
  java.version => 1.6.0_24
  java.vendor => Sun Microsystems Inc.
  java.runtime.name => Java(TM) SE Runtime Environment
  java.runtime.version => 1.6.0_24-b07
  java.vm.name => Java HotSpot(TM) 64-Bit Server VM
  java.vm.version => 19.1-b02
  java.vm.vendor => Sun Microsystems Inc.
  java.vm.info => mixed mode
  java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
  java.specification.name => Java Platform API Specification
  java.specification.version => 1.6
  sun.cpu.endian => little
  sun.desktop => windows
  file.separator => \

The up-to-date check says: REMIND_LATER

Information relevant to JAVA_HOME related problems:

  JAVA_HOME is set to:
C:\Users\Polleux\DOCUME~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
  imagej.dir => C:\Users\Polleux\DOCUME~1\FIJI-W~1\Fiji.app

Information about the version of each plugin:

Activated update sites:
ImageJ: http://update.imagej.net/ (last check:20150116111452)
Fiji: http://fiji.sc/update/ (last check:20150116114028)
HDF5: http://sites.imagej.net/Ronneber/ (last check:20140827124014)

Files not up-to-date:
  1ad3be0d (LOCAL_ONLY) 20140115091640 jars/jpedalSTD.jar
  e58ee14c (LOCAL_ONLY) 20141203154844 macros/Red and Green Puncta
Colocalization Macro .txt
  ed38cb75 (LOCAL_ONLY) 20141203155528 macros/Red and Green Puncta.txt
  3e320440 (LOCAL_ONLY) 20141203155653 macros/Red and Green.txt
  58fcc762 (LOCAL_ONLY) 20141203154402 plugins/Analyze/Colocalization_.class
  347fe260 (LOCAL_ONLY) 20120320144156 plugins/Analyze/vamp/Readme.txt
  ff4fbcde (LOCAL_ONLY) 20120320143128
plugins/Analyze/vamp/vamp2d_v2$pixel.class
  ee7434b3 (LOCAL_ONLY) 20120320143128 plugins/Analyze/vamp/vamp2d_v2.class
  56986440 (LOCAL_ONLY) 20120320143144
plugins/Analyze/vamp/vamp3d_v1$pixel.class
  25b3018b (LOCAL_ONLY) 20120320143144 plugins/Analyze/vamp/vamp3d_v1.class
  3589dfdf (LOCAL_ONLY) 20140117163049 plugins/MultiStackReg1.45_.jar
  946ffba8 (LOCAL_ONLY) 20140219144622 plugins/MultipleKymograph_.class
  54d2cdf2 (LOCAL_ONLY) 20140219144626 plugins/MultipleOverlay_.class
  ed16bdfe (LOCAL_ONLY) 20141203155059 plugins/Red and Green Puncta
Colocalization Macro .txt
  bf8660d2 (LOCAL_ONLY) 20140219144630 plugins/StackDifference_.class
  d3721d57 (LOCAL_ONLY) 20140219144634 plugins/WalkingAverage_.class
  b2afde18 (LOCAL_ONLY) 20140121162540 plugins/cell_counter.jar
  774a1cc0 (LOCAL_ONLY) 20140219144638 plugins/tsp050706.txt

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