<html>
<head>
<base href="http://fiji.sc/bugzilla/" />
</head>
<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989">989</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>HDF5 plugin doesnt load
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>PC
</td>
</tr>
<tr>
<th>OS</th>
<td>Windows
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>normal
</td>
</tr>
<tr>
<th>Priority</th>
<td>P4
</td>
</tr>
<tr>
<th>Component</th>
<td>Plugins
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>tll2120@columbia.edu
</td>
</tr>
<tr>
<th>CC</th>
<td>tll2120@columbia.edu
</td>
</tr></table>
<p>
<div>
<pre>I installed Fiji and ran the updater. Then I added the HDF5 plugin from the
manage sites window. After I restarted Fiji, I tried to import a H5 file. It
opens up to the log and shows /imaging:DATASET but then it never brings up the
java window to let me select the datasets I want to open. I thought maybe it
was this computer but it also happens on the updated version of Fiji on my
MacBook Pro as well. Any thought? Thanks
Information about your version of Java:
os.arch => amd64
os.name => Windows 7
os.version => 6.1
java.version => 1.6.0_24
java.vendor => Sun Microsystems Inc.
java.runtime.name => Java(TM) SE Runtime Environment
java.runtime.version => 1.6.0_24-b07
java.vm.name => Java HotSpot(TM) 64-Bit Server VM
java.vm.version => 19.1-b02
java.vm.vendor => Sun Microsystems Inc.
java.vm.info => mixed mode
java.awt.graphicsenv => sun.awt.Win32GraphicsEnvironment
java.specification.name => Java Platform API Specification
java.specification.version => 1.6
sun.cpu.endian => little
sun.desktop => windows
file.separator => \
The up-to-date check says: REMIND_LATER
Information relevant to JAVA_HOME related problems:
JAVA_HOME is set to:
C:\Users\Polleux\DOCUME~1\FIJI-W~1\Fiji.app/java/win64/jdk1.6.0_24//jre
imagej.dir => C:\Users\Polleux\DOCUME~1\FIJI-W~1\Fiji.app
Information about the version of each plugin:
Activated update sites:
ImageJ: <a href="http://update.imagej.net/">http://update.imagej.net/</a> (last check:20150116111452)
Fiji: <a href="http://fiji.sc/update/">http://fiji.sc/update/</a> (last check:20150116114028)
HDF5: <a href="http://sites.imagej.net/Ronneber/">http://sites.imagej.net/Ronneber/</a> (last check:20140827124014)
Files not up-to-date:
1ad3be0d (LOCAL_ONLY) 20140115091640 jars/jpedalSTD.jar
e58ee14c (LOCAL_ONLY) 20141203154844 macros/Red and Green Puncta
Colocalization Macro .txt
ed38cb75 (LOCAL_ONLY) 20141203155528 macros/Red and Green Puncta.txt
3e320440 (LOCAL_ONLY) 20141203155653 macros/Red and Green.txt
58fcc762 (LOCAL_ONLY) 20141203154402 plugins/Analyze/Colocalization_.class
347fe260 (LOCAL_ONLY) 20120320144156 plugins/Analyze/vamp/Readme.txt
ff4fbcde (LOCAL_ONLY) 20120320143128
plugins/Analyze/vamp/vamp2d_v2$pixel.class
ee7434b3 (LOCAL_ONLY) 20120320143128 plugins/Analyze/vamp/vamp2d_v2.class
56986440 (LOCAL_ONLY) 20120320143144
plugins/Analyze/vamp/vamp3d_v1$pixel.class
25b3018b (LOCAL_ONLY) 20120320143144 plugins/Analyze/vamp/vamp3d_v1.class
3589dfdf (LOCAL_ONLY) 20140117163049 plugins/MultiStackReg1.45_.jar
946ffba8 (LOCAL_ONLY) 20140219144622 plugins/MultipleKymograph_.class
54d2cdf2 (LOCAL_ONLY) 20140219144626 plugins/MultipleOverlay_.class
ed16bdfe (LOCAL_ONLY) 20141203155059 plugins/Red and Green Puncta
Colocalization Macro .txt
bf8660d2 (LOCAL_ONLY) 20140219144630 plugins/StackDifference_.class
d3721d57 (LOCAL_ONLY) 20140219144634 plugins/WalkingAverage_.class
b2afde18 (LOCAL_ONLY) 20140121162540 plugins/cell_counter.jar
774a1cc0 (LOCAL_ONLY) 20140219144638 plugins/tsp050706.txt</pre>
</div>
</p>
<hr>
<span>You are receiving this mail because:</span>
<ul>
<li>You are the assignee for the bug.</li>
</ul>
</body>
</html>