[ImageJ-bugs] [Bug 989] HDF5 plugin doesnt load

[bugzilla at fiji.sc]

http://fiji.sc/bugzilla/show_bug.cgi?id=989

Mark Hiner <hinerm at gmail.com> changed:

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                 CC|                            |hinerm at gmail.com

--- Comment #6 from Mark Hiner <hinerm at gmail.com> ---
Also, there is now SCIFIO-HDF5 - https://github.com/scifio/scifio-hdf5 - which
is using 13.06.2 (because that's what was on our Maven repo).

However, it looks like that jar is the unshaded uber-jar which must be fixed.
Otherwise there is a clash between jhdf5 and apache-commons-io (and potentially
other third-party dependencies). See also 
http://imagej.net/Frequently_Asked_Questions#How_can_I_call_ImageJ_from_my_software.3F

Two ways to fix this are:
1) Shaded uber-jar (e.g. https://github.com/scijava/jython-shaded)
2) Individual mavenized components

Once a maven artifact for 14.12.0 exists we can update SCIFIO-HDF5 and BDV to
use it and update the core Fiji update site accordingly. As a bonus, the HDF5
update site wouldn't have to ship its own jhdf5 library.

Let Curtis and me know if you need further guidance/advice on resolving this
issue.

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