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<body><span class="vcard"><a class="email" href="mailto:hinerm@gmail.com" title="Mark Hiner <hinerm@gmail.com>"> <span class="fn">Mark Hiner</span></a>
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<a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989">bug 989</a>
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<td>hinerm@gmail.com
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<b><a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989#c6">Comment # 6</a>
on <a class="bz_bug_link
bz_status_REOPENED "
title="REOPENED - HDF5 plugin doesnt load"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=989">bug 989</a>
from <span class="vcard"><a class="email" href="mailto:hinerm@gmail.com" title="Mark Hiner <hinerm@gmail.com>"> <span class="fn">Mark Hiner</span></a>
</span></b>
<pre>Also, there is now SCIFIO-HDF5 - <a href="https://github.com/scifio/scifio-hdf5">https://github.com/scifio/scifio-hdf5</a> - which
is using 13.06.2 (because that's what was on our Maven repo).
However, it looks like that jar is the unshaded uber-jar which must be fixed.
Otherwise there is a clash between jhdf5 and apache-commons-io (and potentially
other third-party dependencies). See also
<a href="http://imagej.net/Frequently_Asked_Questions#How_can_I_call_ImageJ_from_my_software.3F">http://imagej.net/Frequently_Asked_Questions#How_can_I_call_ImageJ_from_my_software.3F</a>
Two ways to fix this are:
1) Shaded uber-jar (e.g. <a href="https://github.com/scijava/jython-shaded">https://github.com/scijava/jython-shaded</a>)
2) Individual mavenized components
Once a maven artifact for 14.12.0 exists we can update SCIFIO-HDF5 and BDV to
use it and update the core Fiji update site accordingly. As a bonus, the HDF5
update site wouldn't have to ship its own jhdf5 library.
Let Curtis and me know if you need further guidance/advice on resolving this
issue.</pre>
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