[ImageJ-bugs] [Bug 1057] New: Fiji won't open .czi files created by Zeiss Zen2
bugzilla at fiji.sc
bugzilla at fiji.sc
Tue Apr 21 04:10:20 CDT 2015
http://fiji.sc/bugzilla/show_bug.cgi?id=1057
Bug ID: 1057
Summary: Fiji won't open .czi files created by Zeiss Zen2
Product: Fiji
Version: unspecified
Hardware: Macintosh
OS: Mac OS
Status: NEW
Severity: blocker
Priority: P5
Component: Bio-Formats
Assignee: imagej-bugs at imagej.net
Reporter: amorbach at mpi-cbg.de
I created some .czi files doing live imaging, smaller files for every timepoint
with 9 stacks per file and one large file having all stacks and all timepoints.
The files were created with the Zeiss LSM 780 NLO Laser Scanning Microscope and
Zen2. Other people working with the same system can open their files. However,
mine won't open on any computer (I tried Windows and Mac, Fiji and ImageJ2). It
gives me this error:
(Fiji Is Just) ImageJ 2.0.0-rc-29/1.49q; Java 1.6.0_65 [64-bit]; Mac OS X
10.9.5; 59MB of 4155MB (1%)
java.lang.NumberFormatException: null
at java.lang.Integer.parseInt(Integer.java:417)
at java.lang.Integer.parseInt(Integer.java:499)
at
loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:2173)
at
loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1234)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:702)
at loci.formats.FormatReader.setId(FormatReader.java:1395)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:493)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:140)
at loci.plugins.in.Importer.showDialogs(Importer.java:137)
at loci.plugins.in.Importer.run(Importer.java:75)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:450)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:66)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:486)
at ij.io.Opener.openImage(Opener.java:360)
at ij.io.Opener.openImage(Opener.java:239)
at ij.io.Opener.open(Opener.java:106)
at ij.io.Opener.openAndAddToRecent(Opener.java:288)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
at java.lang.Thread.run(Thread.java:695)
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