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<base href="http://fiji.sc/bugzilla/" />
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<body><table border="1" cellspacing="0" cellpadding="8">
<tr>
<th>Bug ID</th>
<td><a class="bz_bug_link
bz_status_NEW "
title="NEW - Fiji won't open .czi files created by Zeiss Zen2"
href="http://fiji.sc/bugzilla/show_bug.cgi?id=1057">1057</a>
</td>
</tr>
<tr>
<th>Summary</th>
<td>Fiji won't open .czi files created by Zeiss Zen2
</td>
</tr>
<tr>
<th>Product</th>
<td>Fiji
</td>
</tr>
<tr>
<th>Version</th>
<td>unspecified
</td>
</tr>
<tr>
<th>Hardware</th>
<td>Macintosh
</td>
</tr>
<tr>
<th>OS</th>
<td>Mac OS
</td>
</tr>
<tr>
<th>Status</th>
<td>NEW
</td>
</tr>
<tr>
<th>Severity</th>
<td>blocker
</td>
</tr>
<tr>
<th>Priority</th>
<td>P5
</td>
</tr>
<tr>
<th>Component</th>
<td>Bio-Formats
</td>
</tr>
<tr>
<th>Assignee</th>
<td>imagej-bugs@imagej.net
</td>
</tr>
<tr>
<th>Reporter</th>
<td>amorbach@mpi-cbg.de
</td>
</tr></table>
<p>
<div>
<pre>I created some .czi files doing live imaging, smaller files for every timepoint
with 9 stacks per file and one large file having all stacks and all timepoints.
The files were created with the Zeiss LSM 780 NLO Laser Scanning Microscope and
Zen2. Other people working with the same system can open their files. However,
mine won't open on any computer (I tried Windows and Mac, Fiji and ImageJ2). It
gives me this error:
(Fiji Is Just) ImageJ 2.0.0-rc-29/1.49q; Java 1.6.0_65 [64-bit]; Mac OS X
10.9.5; 59MB of 4155MB (1%)
java.lang.NumberFormatException: null
at java.lang.Integer.parseInt(Integer.java:417)
at java.lang.Integer.parseInt(Integer.java:499)
at
loci.formats.in.ZeissCZIReader.translateExperiment(ZeissCZIReader.java:2173)
at
loci.formats.in.ZeissCZIReader.translateMetadata(ZeissCZIReader.java:1234)
at loci.formats.in.ZeissCZIReader.initFile(ZeissCZIReader.java:702)
at loci.formats.FormatReader.setId(FormatReader.java:1395)
at loci.plugins.in.ImportProcess.initializeFile(ImportProcess.java:493)
at loci.plugins.in.ImportProcess.execute(ImportProcess.java:140)
at loci.plugins.in.Importer.showDialogs(Importer.java:137)
at loci.plugins.in.Importer.run(Importer.java:75)
at loci.plugins.LociImporter.run(LociImporter.java:78)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at HandleExtraFileTypes.openImage(HandleExtraFileTypes.java:450)
at HandleExtraFileTypes.run(HandleExtraFileTypes.java:66)
at ij.IJ.runUserPlugIn(IJ.java:199)
at ij.IJ.runPlugIn(IJ.java:163)
at ij.IJ.runPlugIn(IJ.java:152)
at ij.io.Opener.openWithHandleExtraFileTypes(Opener.java:486)
at ij.io.Opener.openImage(Opener.java:360)
at ij.io.Opener.openImage(Opener.java:239)
at ij.io.Opener.open(Opener.java:106)
at ij.io.Opener.openAndAddToRecent(Opener.java:288)
at ij.plugin.DragAndDrop.openFile(DragAndDrop.java:176)
at ij.plugin.DragAndDrop.run(DragAndDrop.java:152)
at java.lang.Thread.run(Thread.java:695)</pre>
</div>
</p>
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