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Correct 3D Drift
| Correct 3D Drift | |
|---|---|
| Project | Fiji |
| URL | https://imagej.net/Correct_3D_Drift |
| Source | on GitHub |
| License | GPLv3 |
| Release | 1.0.1 |
| Date | Sat Apr 29 22:37:37 CDT 2017 |
| Development status | Active |
| Support status | Active |
| Team | |
| Founders | Albert Cardona |
| Leads | Christian Tischer |
| Developers | Christian Tischer |
| Debuggers | Christian Tischer |
| Reviewers | Christian Tischer |
| Support | Christian Tischer |
| Maintainers | Christian Tischer, Curtis Rueden |
| Contributors | Albert Cardona, Robert Bryson-Richardson, Jan Eglinger |
This Fiji menu command is implemented by the script Correct_3D_Drift.py.
- The script expects the currently open and active image to be a hyperstack (or virtual hyperstack) consisting of 2D or 3D volumes over time. The script registers the time points to each other using the phase correlation implementation of ImgLib 1.
- Once implemented a dialogue box will request the use to select the color channel to use for registration.
- If memory is limiting on the system then the user can select to use a virtualstack for the result.
- If a virtualstack is selected the a folder save the aligned stack to needs to be selected.
- After some processing (there are progress bars), the resulting, registered volumes are opened. If a virtualstack was selected the registered volume will already be saved in the chosen target folder.
The script was originally written by Albert Cardona and Robert Bryson-Richardson while attending the Developmental Imaging EMBO course organized by Gabriel G. Martins.
