NOTICE! This is a static HTML version of a legacy ImageJ Trac ticket.

The ImageJ project now uses GitHub Issues for issue tracking.

Please file all new issues there.

Ticket #710 (closed defect: duplicate)

Opened 2011-08-01T10:58:06-05:00

Last modified 2012-05-23T12:31:47-05:00

Fix BioFormats to handle Gray .ics files.

Reported by: aivar Owned by: hinerm
Priority: major Milestone: imagej2-b2-bugfixes
Component: SCIFIO Version:
Severity: serious Keywords:
Cc: Blocked By:


Rewrite ICSReader metadata handling. This already has a hack to handle Paul Barber's lifetime ICS files. However it only handles files with "x y t" order. Some files are in "t x y" order.

Get ICSReader/ImageOpener/etc. to work with "t x y" interleaved files.

Change History

comment:1 Changed 2011-08-01T11:16:37-05:00 by aivar

  • Status changed from new to accepted

comment:2 Changed 2011-08-01T12:10:32-05:00 by curtis

  • Milestone changed from biweekly-2011: Aug-01 to Aug-12 to imagej-2.0-alpha5

Milestone biweekly-2011: Aug-01 to Aug-12 deleted

comment:3 Changed 2011-10-10T09:44:14-05:00 by curtis

Aivar, is this finished now?

comment:4 Changed 2011-12-05T12:31:52-06:00 by aivar

ICSReader does a better job of handling metadata.

However there are still problems reading "t x y" interleaved files.

comment:5 Changed 2012-02-27T10:53:28-06:00 by curtis

  • Owner changed from aivar to hinerm
  • Status changed from accepted to assigned
  • Milestone changed from imagej-2.0-beta1 to imagej-2.0-beta3

comment:6 Changed 2012-02-29T10:03:13-06:00 by hinerm

  • Status changed from assigned to closed
  • Resolution set to duplicate

Moved to  ome:#8170

comment:7 Changed 2012-05-23T12:31:47-05:00 by bdezonia

  • Milestone changed from imagej-2.0.0-beta4 to imagej-2.0.0-beta2