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Ticket #341 (closed task: fixed)

Opened 2011-02-15T11:21:04-06:00

Last modified 2011-04-20T16:36:08-05:00

Fix/enhance Imglib 2.0 for use by ImageJ 2

Reported by: bdezonia Owned by: bdezonia
Priority: major Milestone: biweekly-2011: Apr-11 to Apr-22
Component: ImgLib2 Version:
Severity: serious Keywords:
Cc: Blocked By:


Imglib2 will be pulled into the core of IJ2. It needs some work for that to happen:

  • it currently has compile errors
  • it does not have dimensional labels
  • it does not have metadata
  • it does not label axes with units
  • it does not support functionality like ImageStack::addSlice()

Address these as needed to get to where we can intergrate the Img interface in Imglib2 into IJ2.

Change History

comment:1 Changed 2011-02-15T11:21:11-06:00 by bdezonia

  • Status changed from new to accepted

comment:2 Changed 2011-02-24T14:27:03-06:00 by bdezonia

wating on Stephan to remove the compile errors. Once that's done Img can be the interface to Dataset. Dataset will containt an Img, metadata (including labels), and units.

comment:3 Changed 2011-02-24T15:01:46-06:00 by bdezonia

spent time learning the internals of imglib2

comment:4 Changed 2011-03-23T13:41:58-05:00 by bdezonia

  • Milestone changed from biweekly-2011: Mar-14 to Mar-25 to biweekly-2011: Mar-28 to Apr-08

comment:5 Changed 2011-04-20T16:36:08-05:00 by bdezonia

  • Status changed from accepted to closed
  • Resolution set to fixed

I think all that is left with this is to add units to ImageJ (or Imglib). Will close this and add a new ticket for that.