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Ticket #26 (closed task: duplicate)

Opened 2010-02-19T11:18:26-06:00

Last modified 2010-10-08T11:33:01-05:00

Improve Bio-Formats ITK plugin implementation

Reported by: curtis Owned by: hinerm
Priority: major Milestone: biweekly-2010: Oct-04 to Oct-15
Component: FARSIGHT Version:
Severity: non-issue Keywords:
Cc: Blocked By:


To facilitate using  Bio-Formats from within  FARSIGHT, we have created a  Bio-Formats ITK ImageIO plugin.

The current implementation is functional; however, there are several problems and limitations:

  • Support for writing images not yet implemented.
  • Hard-coded 5-dimensional image structure, regardless of actual image dimensionality.
  • No population of physical pixel sizes, due to invalid memory access errors on some systems (e.g., OS X 10.5) when such code is enabled.
  • More testing needed with multichannel data (and multichannel data does not work in FARSIGHT, due to limitations in the FARSIGHT codeebase).
  • More testing needed on Windows systems.

It may make sense to break these tasks into separate tickets over time, as needed.

Change History

comment:1 Changed 2010-09-17T17:20:40-05:00 by curtis

  • Owner changed from bselinsky to hiner
  • Status changed from new to assigned
  • Milestone changed from progress-report to biweekly-2010: Sep-20 to Oct-01

comment:2 Changed 2010-09-22T13:15:14-05:00 by curtis

  • Owner changed from hiner to hinerm

comment:3 Changed 2010-10-08T11:33:01-05:00 by hinerm

  • Status changed from assigned to closed
  • Resolution set to duplicate

Split this ticket into several other tickets: