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Ticket #22 (closed feature: fixed)

Opened 2010-02-18T17:08:42-06:00

Last modified 2012-02-23T14:37:51-06:00

ImageJ module for CellProfiler

Reported by: curtis Owned by:
Priority: major Milestone: progress-report
Component: CellProfiler Version:
Severity: non-issue Keywords:
Cc: Blocked By: #79
Blocking: #1002


As part of our integration effort between CellProfiler and ImageJ, we would like to create a module for CellProfiler that calls an ImageJ macro or other operation. This would allow ImageJ processing to be incorporated into a larger CellProfiler analysis pipeline. Easiest to start would be single image in, single image out, but other configurations could be useful as well.

Change History

comment:1 Changed 2010-06-29T11:08:36-05:00 by leek

  • Status changed from new to closed
  • Resolution set to fixed

CellProfiler now has a RunImageJ module. The module can either run commands or macros. It either displays the available commands or displays a text-box that allows macro input.

The module optionally inserts an ImagePlus image into the window manager and optionally extracts an image from the current ImagePlus image. You can insert multiple RunImageJ modules in order to insert or extract multiple images.

comment:2 Changed 2012-02-23T11:36:08-06:00 by curtis

  • Type changed from task to feature

comment:3 Changed 2012-02-23T14:37:51-06:00 by curtis

  • Blocking 1002 added

comment:4 Changed 2012-02-23T14:38:09-06:00 by curtis

  • Blocked By 79 added