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Ticket #1907 (closed defect: fixed)

Opened 2013-06-04T13:41:35-05:00

Last modified 2013-06-06T15:46:24-05:00

Files open multichannel incorrectly

Reported by: bdezonia Owned by: hinerm
Priority: major Milestone: imagej2-b7-ndim-data
Component: I/O Version:
Severity: serious Keywords:
Cc: Blocked By:
Blocking: #1563


I have a number of files that open as multichannel when in fact they may have time points or z planes as well. I've attached one. It loads differently in Fiji vs. IJ2.


organ-of-corti.tif (15.6 MB) - added by bdezonia 2013-06-04T13:42:00-05:00.
MF-2CH-Z-T.tif (25.4 MB) - added by bdezonia 2013-06-04T14:49:40-05:00.
Another example: compare to BF Importer results in Fiji

Change History

Changed 2013-06-04T13:42:00-05:00 by bdezonia

Changed 2013-06-04T14:49:40-05:00 by bdezonia

Another example: compare to BF Importer results in Fiji

comment:1 Changed 2013-06-05T12:12:26-05:00 by hinerm

There were two issues here:

  • axis labels were being mislabeled

fixed in:

  • TIFFs were being opened by the MinimalTIFFFormat instead of the TIFFFormat because of a prioritization error.

fixed in:

Note that organ-of-corti.tif still looks off, I believe for the same reasons as #1908

comment:2 Changed 2013-06-06T15:46:24-05:00 by bdezonia

  • Status changed from new to closed
  • Resolution set to fixed