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Ticket #1887 (closed defect: fixed)

Opened 2013-05-23T15:01:48-05:00

Last modified 2013-06-04T11:46:01-05:00

Some calibrations are NaN

Reported by: bdezonia Owned by: hinerm
Priority: major Milestone: imagej2-b7-ndim-data
Component: SCIFIO Version:
Severity: serious Keywords:
Cc: Blocked By:
Blocking: #1563


Using the scifio opener (on the scifio-cells branch of IJ2) when you open files (like PNG, JPG) the X and Y calibration values are getting set to NaN. This causes some legacy plugins (like 3d Project) to fail to run. We should update the opener such that spatial dim calibrations are initialized to 1.0 if actual value unknown.

Change History

comment:1 Changed 2013-05-28T14:07:08-05:00 by hinerm

This should be fixed on the latest  scifio-devel. Every calibration defaults to 1.0 if, after translating to a MetadataStore, the corresponding physical pixel size is null.

comment:2 Changed 2013-06-04T11:46:01-05:00 by bdezonia

  • Status changed from new to closed
  • Resolution set to fixed

Merged. Closing.