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Ticket #125 (closed task: fixed)

Opened 2010-07-13T09:46:23-05:00

Last modified 2010-07-13T15:48:11-05:00

Update CellProfiler to Bioformats 4.2.0 stable

Reported by: leek Owned by: leek
Priority: major Milestone: biweekly-2010: Jul-12 to Jul-23
Component: Analysis Plugins Version:
Severity: serious Keywords:
Cc: Blocked By:


Update the loci_tools.jar in CellProfiler to the stable release and perform whatever integration is necessary.

Change History

comment:1 Changed 2010-07-13T15:48:11-05:00 by leek

  • Status changed from new to closed
  • Resolution set to fixed

I've checked in changes that make CP work with BioFormats and it's passing our tests. The reader worked without any changes.

The new OME/XML broke the writer - MetadataStore has changed its signature. I did the mostly minor work to repair this and we can write both OME/XML tiffs and AVI files.