[ImageJ-devel] Blockmatching crashed

Curtis Rueden ctrueden at wisc.edu
Thu Jan 8 15:19:51 CST 2015


Hi Steffi,

> Something changed, it works now, the new version is there. I guess
> Curtis, you fixed it?

Nope, but I'm glad it is working now!

Regards,
Curtis

P.S. All the TrakEM2 components (https://github.com/trakem2) still need to
be reintegrated into the top-level Fiji repository (
https://github.com/fiji/fiji). After that, as discussed previously, we can
move away from needing to do manual uploads.


On Thu, Jan 8, 2015 at 8:36 AM, Stephan Preibisch <
stephan.preibisch at einstein.yu.edu> wrote:

>  Something changed, it works now, the new version is there. I guess
> Curtis, you fixed it? Thanks so much!!!
>
>  On Jan 8, 2015, at 12:26 , Stephan Preibisch <
> stephan.preibisch at einstein.yu.edu> wrote:
>
>  Hi Stephan, hi Curtis,
>
>  I was playing with Saalfeld’s block matching (Plugins > Feature
> Extraction > Extract Block Matching Correspondences) which was crashing
> because it was still compiled for the pre-release imglib2 thus not finding
> RealPointSampleList (2.0.0-SNAPSHOT version). I noticed that in the 2.0.2
> release (
> https://github.com/StephanPreibisch/blockmatching/commit/3408876467adf3d52f04d506e214ee9eba404348)
> everything was fixed already so I decided to upload it to the Fiji Uploader
> (sorry, maybe a bad decision … but it seemed so easy to fix). Something
> went wrong during that upload. The updater said the upload succeeded but
> after a restart it still showed up as locally modified, the 2.0.0-SNAPSHOT
> version is still there. Now when I try to upload again this exception is
> thrown:
>
>  java.lang.RuntimeException: db.xml.gz was changed in the meantime (was
> 20150107160055 but now is 20150108113217)
> at net.imagej.updater.FilesUploader.verifyTimestamp(FilesUploader.java:403)
> at
> net.imagej.updater.FilesUploader$VerifyTimestamp.addItem(FilesUploader.java:338)
> at
> net.imagej.updater.util.AbstractProgressable.addItem(AbstractProgressable.java:75)
> at
> net.imagej.plugins.uploaders.webdav.WebDAVUploader.upload(WebDAVUploader.java:205)
> at net.imagej.updater.FilesUploader.upload(FilesUploader.java:260)
> at net.imagej.ui.swing.updater.UpdaterFrame.upload(UpdaterFrame.java:805)
> at net.imagej.ui.swing.updater.UpdaterFrame$5$1.run(UpdaterFrame.java:311)
>
>  I am really sorry for that, maybe simply my internet connection dropped
> during the upload?
>
>  Thanks for any help!
>
>  Cheers,
> Steffi
>
>
>
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