[ImageJ-devel] Fix EclipseHelper regression

Lee Kamentsky leek at broadinstitute.org
Wed Mar 19 10:25:59 CDT 2014

Hi all,
I think I'm suffering from the problem addressed by commit
scijava-common. On the Mac, CellProfiler is compiling annotations at
runtime after having moved the Jar files from their original location - I
don't know if that's the problem, but the upshot is that the indexing
process fails when I try to create a context.

I'm using the POMs for the Beta7.7 release and was hoping I could pick up
scijava-common 2.11.0 in order to get that patch, but
the interface to Contextual, so oil and water don't mix for now. Any
suggestions? I'm thinking of cherrypicking c078b33fd to scijava-common 2.9
and including the resulting EclipseHelper in my own JAR that will get
loaded ahead of scijava-common.jar.

Offending CellProfiler console output below...

[ECLIPSE HELPER] Indexing annotations...
Warning: could not load class 'jars.JavaScript.JavaScript'
(jars/JavaScript/JavaScript (wrong name: JavaScript)); skipping
Warning: could not load class
(jars/JavaScript/org/mozilla/classfile/ByteCode (wrong name:
org/mozilla/classfile/ByteCode)); skipping
Warning: could not load class
(jars/JavaScript/org/mozilla/classfile/ClassFileField (wrong name:
org/mozilla/classfile/ClassFileField)); skipping

... more of same...

Thx in advance,
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