[ImageJ-devel] opening a tif file problem

[Curtis Rueden]

Hi Mohamed,

> Before the latest updates, I used to be able to open tif files with
> ij2. Now I am getting an error (see below for the warnings I get when
> loading ij launcher and the error after trying to open a "tif" file).

Thank you for the bug report, and very sorry for the long delay in reply.

I believe these problems are resolved on the master branch, as well as in
the last few releases (latest is 2.0.0-beta-7.5). At least, I am able to
successfully open TIFF files on my system.

Could you please let us know if this problem persists for you?

Thanks,
Curtis


On Tue, Jul 30, 2013 at 11:33 AM, Mohamed Tleis
<mohammedtleis at hotmail.com>wrote:

>  Dear Developers,
>
> I wonder whether this is important for you.
>
> Before the latest updates, I used to be able to open tif files with ij2.
> Now I am getting an error (see below for the warnings I get when loading ij
> launcher and the error after trying to open a "tif" file).
>
> Note that If I switch to Legacy mode, open the image, then back into
> modern mode , things work fine.
>
> However, I still am wondering if the Invalid services in the warning
> messages is something specific to my machine. Am I missing some package?
>
> run:
> ...
> log4j:WARN No appenders could be found for logger (io.scif.Format).
> log4j:WARN Please initialize the log4j system properly.
> ...
> [WARNING] Invalid service: imagej.data.lut.DefaultLUTService
> ....
> [WARNING] Overridden plugin ij.plugin.AboutBox is blacklisted
> [WARNING] Overridden plugin ij.plugin.Commands("quit") is blacklisted
> ...
> [WARNING] Invalid service: io.scif.services.LuraWaveServiceImpl
> [WARNING] Invalid service: ome.xml.services.DefaultOMEXMLMetadataService
> [WARNING] Invalid service: ome.xml.services.OMEXMLServiceImpl
> ...
> // Trying to open a tif file
> [ERROR] Module threw exception
> java.lang.NullPointerException
>     at imagej.data.lut.io.LUTIOPlugin.supportsOpen(LUTIOPlugin.java:66)
>     at imagej.io.DefaultIOService.getOpener(DefaultIOService.java:68)
>     at imagej.io.DefaultIOService.open(DefaultIOService.java:87)
>     at imagej.core.commands.io.OpenFile.run(OpenFile.java:87)
>     at imagej.command.CommandModule.run(CommandModule.java:163)
>     at imagej.module.ModuleRunner.run(ModuleRunner.java:169)
>     at imagej.module.ModuleRunner.call(ModuleRunner.java:126)
>     at imagej.module.ModuleRunner.call(ModuleRunner.java:67)
>     at java.util.concurrent.FutureTask$Sync.innerRun(FutureTask.java:334)
>     at java.util.concurrent.FutureTask.run(FutureTask.java:166)
>     at
> java.util.concurrent.ThreadPoolExecutor.runWorker(ThreadPoolExecutor.java:1110)
>     at
> java.util.concurrent.ThreadPoolExecutor$Worker.run(ThreadPoolExecutor.java:603)
>     at java.lang.Thread.run(Thread.java:722)
>
> Best Regards,
> Mohamed Tleis
>
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