[ImageJ-devel] Fiji and scifio

[Curtis Rueden]

Hi Stephan,

are there plans to include scifio into some Fiji branch?  Or is it already?
>

SCIFIO is part of the Bio-Formats submodule, and is already included as
part of loci_tools.jar.

I would like to build imglib2 master by Fiji's Build.sh which
> is currently impossible due to the dependency of imglib-io to scifio.
>

Thanks for letting me know! The problem is not the dependency on SCIFIO,
but rather a version clash between codebases. I am working on a fix now and
will commit by the end of today.

Regards,
Curtis


On Mon, Apr 2, 2012 at 12:29 PM, Stephan Saalfeld <saalfeld at mpi-cbg.de>wrote:

> Hi,
>
> are there plans to include scifio into some Fiji branch?  Or is it
> already?  I would like to build imglib2 master by Fiji's Build.sh which
> is currently impossible due to the dependency of imglib-io to scifio.
>
> Building imglib2-io.jar <- imglib2/io/src/main/java/net/imglib2/io...
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:147:
> cannot find symbol
> symbol  : method guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> location: class loci.formats.AxisGuesser
> AxisGuesser.guessImgLib(axes, oldLengths, axisLengths);
>           ^
> ./modules/imglib/imglib2/io/src/main/java/net/imglib2/io/ImgSaver.java:453:
> cannot find symbol
> symbol  : method guessImgLib(net.imglib2.meta.AxisType[],long[],long[])
> location: class loci.formats.AxisGuesser
> dimOrder = AxisGuesser.guessImgLib(axes, oldLengths, axisLengths);
>
>
> Thanks and best,
> Stephan
>
>
>
>
>
>
>
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