[ImageJ-devel] [fiji-devel] [Bug 258] Opening multiposition LSM files by Drag&Drop throws exception (fwd)

[Daniel James White]

Hi all .lsm sufferers,


On Apr 4, 2011, at 11:46 PM, Johannes Schindelin wrote:

> Hi Mark & other .lsm experts,
> 
>> ---------- Forwarded message ----------
>> [...]
>> http://pacific.mpi-cbg.de/cgi-bin/bugzilla/show_bug.cgi?id=258
>> 
>> [...]
>> ------- Comment #9 from johannes.schindelin at gmx.de  2011-04-04 23:31 -------
>> I pushed the changes to the 'lsm-reader-4.0g' branch, and hope to merge 
>> to 'master' and to upload to the Updater soon.
> 
> May I ask you for a quick sanity check? It's actually very small:
> 
> http://pacific.mpi-cbg.de/cgi-bin/gitweb.cgi?p=fiji.git;a=commitdiff;h=7e70bc5762abf993b729910b4c3b0414e5a97ae6

Hmmm, looking at the diffs... it seems that tile position is stuffed into the time dimension.

So whats gonna happen if there is a time series tile scan?
"There may be trouble ahead, but while there's moonlight, and music, and love and romance..."

Do we have a strategy in imageJ2 for dealing with multi stage xy position data sets
that also allows time series?

Imglib is the answer guess? But hoiw?
Does imglib have a concept for this rather strange pair of extra dimensions: x and y stage position? 
Some kind of x and y offset (in theory also z could be "tiled" eg. when a z piezo stepper has a limited range, and you do several scans in z to cover a larger range)

???

Dan


> 
> Ciao,
> Dscho
> 
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Dr. Daniel James White BSc. (Hons.) PhD
Senior Microscopist / Image Visualisation, Processing and Analysis
Light Microscopy and Image Processing Facilities 
Max Planck Institute of Molecular Cell Biology and Genetics
Pfotenhauerstrasse 108
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Germany

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