[ImageJ-devel] CellProfiler / ImageJ

[Lee Kamentsky]

Sneak preview: I've created an ImageJ module (RunImageJ) in 
CellProfiler; because of AWT issues, it only works in Windows for now. 
It's in the code-base if you're hardcore, for the curious with access to 
a PC, you can get an MSI install from http://www.broadinstitute.org/~leek

To see it in its full chimeral glory, put the RunImageJ module in your 
pipeline (it's in the Image Processing module group) and press the 
"Show" button at the bottom of the module settings panel. For now, it 
works by optionally injecting a single image into ImageJ's current 
ImagePlus object, running a macro or command and then harvesting the 
current ImagePlus object. I am guessing that a clever macro writer might 
operate on multiple images with several RunImageJ modules which each 
inject an image into ImageJ or extract an image from ImageJ. I can 
probably put and get images by title in a single module, wanted to see 
if people liked the initial direction before making it too fancy.

--Lee